Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq1066 116 1e-21 >seq1066 Length=13853 Score = 116 bits (128), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 19220 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGTGCATGGGCGGCAAATAACTAT 19279 |||||||||||||| | ||||||||| || ||||| ||||||| ||||||||| | Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 19280 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 19339 |||||||| |||||| | ||||||| || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 19340 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 19379 ||||| || || || ||| | |||||||| | ||| |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200501843816560