Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq223 100 3e-16 >seq223 Length=82600 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 ||||||||||||||||||| ||||| |||||||| ||||| |||||| | |||| | Sbjct 43784 AGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTCTTCACAT 43843 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 ||| | | || | |||||| ||||| | ||| | ||||| || || || ||||| | Sbjct 43844 TTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGCGTTTTCA 43903 Query 132111 TGAAAATCTGCAT 132123 |||||||||||| Sbjct 43904 CGAAAATCTGCAT 43916 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040 ||||||| | ||||||| ||||| ||||||||||| || ||||| ||||| |||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100 |||| | || | ||||||| |||||| ||||| | ||| | ||||| || || Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124 || ||||| | || ||||||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCATG 43340 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC-GGTAATTT 132038 || ||| | | | |||| ||||| ||||| || || ||||||||||| || ||| || Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405 Query 132039 TTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCA 132097 ||||||| ||| | ||| | || || | |||||||||||||| || | ||||| ||| Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465 Query 132098 GTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| | ||| || |||||| Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCATG 42492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 131983 ACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC-GGTAATTTTTT 132041 ||| | | ||||||| ||||||||||| || || || |||||||| || ||| ||| | Sbjct 42633 ACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGT 42692 Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101 ||| | | ||| | |||||| | || |||||||| | ||| | || || ||||| | Sbjct 42693 CTTT-ACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTA 42751 Query 132102 GAGTTTTTATGAAAATCTGCAT 132123 ||||||| | ||| |||||||| Sbjct 42752 GAGTTTTCACGAATATCTGCAT 42773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 131982 TACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTT 132041 |||| | | | |||| ||| |||||||| || || || ||||| ||||| |||||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125 Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101 ||||| | ||| | ||| || | |||||||||||| | ||| | ||||| || || | Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185 Query 132102 GAGTTTTTATGAAAATCTGCAT 132123 |||||| | ||||| ||||| Sbjct 42186 AAGTTTTCACAAAAATTTGCAT 42207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586440048160