Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq223 100 3e-16
>seq223
Length=82600
Score = 100 bits (110), Expect = 3e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050
||||||||||||||||||| ||||| |||||||| ||||| |||||| | |||| |
Sbjct 43784 AGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTCTTCACAT 43843
Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110
||| | | || | |||||| ||||| | ||| | ||||| || || || ||||| |
Sbjct 43844 TTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGCGTTTTCA 43903
Query 132111 TGAAAATCTGCAT 132123
||||||||||||
Sbjct 43904 CGAAAATCTGCAT 43916
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 131981 TTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTT 132040
||||||| | ||||||| ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 132041 TGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTC 132100
|||| | || | ||||||| |||||| ||||| | ||| | ||||| || ||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 132101 AGAGTTTTTATGAAAATCTGCATG 132124
|| ||||| | || |||||||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCATG 43340
Score = 89.7 bits (98), Expect = 5e-13
Identities = 110/147 (75%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC-GGTAATTT 132038
|| ||| | | | |||| ||||| ||||| || || ||||||||||| || ||| ||
Sbjct 42348 TTCACCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA--TT 42405
Query 132039 TTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCA 132097
||||||| ||| | ||| | || || | |||||||||||||| || | ||||| |||
Sbjct 42406 TTTGTTTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCA 42465
Query 132098 GTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || ||||| | ||| || ||||||
Sbjct 42466 GTAAGCGTTTTAACGAATATTTGCATG 42492
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 131983 ACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC-GGTAATTTTTT 132041
||| | | ||||||| ||||||||||| || || || |||||||| || ||| ||| |
Sbjct 42633 ACCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGT 42692
Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101
||| | | ||| | |||||| | || |||||||| | ||| | || || ||||| |
Sbjct 42693 CTTT-ACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTA 42751
Query 132102 GAGTTTTTATGAAAATCTGCAT 132123
||||||| | ||| ||||||||
Sbjct 42752 GAGTTTTCACGAATATCTGCAT 42773
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 131982 TACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTT 132041
|||| | | | |||| ||| |||||||| || || || ||||| ||||| ||||||
Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125
Query 132042 GTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCA 132101
||||| | ||| | ||| || | |||||||||||| | ||| | ||||| || || |
Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185
Query 132102 GAGTTTTTATGAAAATCTGCAT 132123
|||||| | ||||| |||||
Sbjct 42186 AAGTTTTCACAAAAATTTGCAT 42207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476586440048160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |