Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1478 80.6 8e-12 seq1293 80.6 8e-12 seq1167 80.6 8e-12 seq241 80.6 8e-12 >seq1478 Length=8064 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 5997 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 6053 >seq1293 Length=10179 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 1141 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 1197 >seq1167 Length=12199 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 3180 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 3236 >seq241 Length=76124 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| Sbjct 16637 TAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAATGTCGCTGGTTCAATCCCGG 16693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848879536620