Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq223 122 9e-23 seq18 122 9e-23 >seq223 Length=82600 Score = 122 bits (134), Expect = 9e-23 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| || ||||||||||| || || ||||||||||| ||||| | ||||||| Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTA-TTTTTGT 42410 Query 134634 TTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || | || | |||| ||||| |||| ||||| ||||| || || ||||| || || | Sbjct 42411 TTTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAG 42470 Query 134693 AGTTTTAACGAAAATTTGCAT 134713 ||||||||||| |||||||| Sbjct 42471 CGTTTTAACGAATATTTGCAT 42491 Score = 109 bits (120), Expect = 6e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| ||||| || ||||| || || || ||||| || || |||||||| | Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 134634 TTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || || | | |||| ||||| |||| ||||| || || || || ||||| |||||||| Sbjct 42128 TTCAC-GTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAA 42186 Query 134693 AGTTTTAACGAAAATTTGCATT 134714 |||||| || |||||||||||| Sbjct 42187 AGTTTTCACAAAAATTTGCATT 42208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||| || || | |||||| ||||| || || |||||||| || ||||||||||| | Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || ||| |||| || || || || ||||||||||| || || | Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| |||||||| |||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| |||||||||||| || || || |||||||| || || || || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | ||||| |||||||| || ||||| || || || Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| || || ||||||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| || |||||||| || || |||||||| || || ||||||||| Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | |||||| || | || || ||||| ||||||||| Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| Sbjct 43616 GTCTTGACAAAAATCTGCAT 43635 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| ||||| || || | ||||||||| || || || || |||||||| |||||||| || Sbjct 42915 TTTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTT 42974 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | ||||| |||| || || || ||||| || || || || || Sbjct 42975 AGTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGT 43034 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||||||||||||| Sbjct 43035 CAATGTCTTGACGAAAATTTGCATT 43059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| ||||||||||| || ||||||||||| || || || || ||||| ||||| || | Sbjct 41493 GTTTACCTGCAAAAATTAATCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATCT 41552 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | ||||| || | || || || | ||||| || | |||||| || || || | Sbjct 41553 TCGCCTTGACATTTTCTATGGTATCCGAAGGCTCCACTTCCAAAGTAATAGTCTTCCCTG 41612 Query 134689 TTAAAGTTTTAACGAAAATTTGCATT 134714 | | ||||| ||||| || |||||| Sbjct 41613 TCAGCGTTTTCACGAATATCTGCATT 41638 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 |||| || || ||||||| ||||| || ||||| ||||| || || || |||||||||| Sbjct 41781 GTTTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTT 41840 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | || || || | || || |||| || || || || || || ||||| || | Sbjct 41841 TCGTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAG 41900 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 ||| |||||| || || |||||||| Sbjct 41901 TTAGAGTTTTCACAAAGATTTGCAT 41925 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | ||||||||||| || || || ||||| || ||||||||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || ||||||| || || || || ||||| ||||| |||||| Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || ||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 >seq18 Length=263653 Score = 122 bits (134), Expect = 9e-23 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 21413 CGCCAAACCTCTTGTATTCGCCGACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTG 21472 |||| || | | ||||||||| ||| ||||||||||||||| || || ||||| || | Sbjct 150709 CGCCGCACTTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCG 150650 Query 21473 CAATGTTTTTCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATT 21532 || ||| |||||| | || ||||| || | | | | || || ||| | Sbjct 150649 ATATCATTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACT 150590 Query 21533 CCACGCACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGT-CGCAATTCATG 21591 | || |||||||||| |||||| |||| |||||||| ||||| | || ||||||||||| Sbjct 150589 CAACCAACAAACGATCGGCCACGTATTCTATGTATTGGCACAT-CAGTACGCAATTCATG 150531 Query 21592 CCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 || | ||| | ||| || || || ||||| | ||||| | ||| || || ||||| || Sbjct 150530 CCGATCAGGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTC 150472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505372144553120