Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq18 140 4e-28
seq63 89.7 7e-13
>seq18
Length=263653
Score = 140 bits (154), Expect = 4e-28
Identities = 209/296 (71%), Gaps = 7/296 (2%)
Strand=Plus/Minus
Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726
||| ||||| || ||||| |||||||| || || ||||| || || | |||||| |||
Sbjct 150310 AAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCC 150251
Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC 39786
||||||||| || || || || || |||||||| ||||||| |||| | | | || |
Sbjct 150250 AGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGAC 150193
Query 39787 ATTATG-----TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841
|| || |||||| | |||||||| || |||||||| || || || || ||
Sbjct 150192 TTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTC 150133
Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901
|| || || || || || | || ||| | ||||| || ||| || || || | |
Sbjct 150132 TCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGC 150073
Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957
||||||||||| || || || || || || || || || || || |||||||| ||
Sbjct 150072 AGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCA 150017
Score = 100 bits (110), Expect = 4e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
||||||||||| || || | | || || ||||| || || ||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| || || |||||||| ||||| ||| | || | | | || || | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
|| | ||| || || ||||||||||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|| || || || ||||| || || ||||||| || ||| | || |||||| ||| |||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
>seq63
Length=178715
Score = 89.7 bits (98), Expect = 7e-13
Identities = 195/291 (67%), Gaps = 2/291 (1%)
Strand=Plus/Minus
Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939
||| | ||||||||||| || || ||||| | |||||| || | || || |||||
Sbjct 173341 CCAGTTCCAAAGATCAGTGGGCGTGACGTTCCACATATCGTACTGCAATATCCCTTTACT 173282
Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC 68999
|||||| | ||||| |||| ||||| | || || || ||||| ||||
Sbjct 173281 GATCGGTGATCCTTCGTATGTGGCATAGGGTCCAAAATCTTTTGCCAGCTCACAGCTTGT 173222
Query 69000 CTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAG 69059
|| | ||| ||| |||||| ||||| || || | ||| || | |||||
Sbjct 173221 TTCCAGGGCAGCGTGATAAATGGTTTCAAAGATTTGGCGATTTAGCTTAAACGCTTCGGC 173162
Query 69060 ACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119
| ||||| |||||| | | | |||||| |||||||| | |||||| || || || ||
Sbjct 173161 AGATTCGAAGGGATAACGCATTAAAATAAAAGCATCTGCAAGTCCCTGCACTCCGATGCC 173102
Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170
||||| | ||||| | |||| || || || ||| || |||| ||||
Sbjct 173101 TATAGGACGATGTCGCATATTCGATGTTCTCGC--CTGCAAAAGGAAAATA 173053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686873115087840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |