Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18 140 4e-28 seq63 89.7 7e-13 >seq18 Length=263653 Score = 140 bits (154), Expect = 4e-28 Identities = 209/296 (71%), Gaps = 7/296 (2%) Strand=Plus/Minus Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 ||| ||||| || ||||| |||||||| || || ||||| || || | |||||| ||| Sbjct 150310 AAAAGTGAGCCCTGGCATGAGACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCC 150251 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC 39786 ||||||||| || || || || || |||||||| ||||||| |||| | | | || | Sbjct 150250 AGAAAAGAATATACCCTCGACGGCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGAC 150193 Query 39787 ATTATG-----TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 || || |||||| | |||||||| || |||||||| || || || || || Sbjct 150192 TTTTTGTCCGCTATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTC 150133 Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 || || || || || || | || ||| | ||||| || ||| || || || | | Sbjct 150132 TCAATGGCGTTGAACAGGTGGTGGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGC 150073 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 ||||||||||| || || || || || || || || || || || |||||||| || Sbjct 150072 AGACTATACATCTCCGAGTGAATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCA 150017 Score = 100 bits (110), Expect = 4e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||||||||| || || | | || || ||||| || || ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| || || |||||||| ||||| ||| | || | | | || || | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | ||| || || ||||||||||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || || || || ||||| || || ||||||| || ||| | || |||||| ||| ||| Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 >seq63 Length=178715 Score = 89.7 bits (98), Expect = 7e-13 Identities = 195/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 ||| | ||||||||||| || || ||||| | |||||| || | || || ||||| Sbjct 173341 CCAGTTCCAAAGATCAGTGGGCGTGACGTTCCACATATCGTACTGCAATATCCCTTTACT 173282 Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC 68999 |||||| | ||||| |||| ||||| | || || || ||||| |||| Sbjct 173281 GATCGGTGATCCTTCGTATGTGGCATAGGGTCCAAAATCTTTTGCCAGCTCACAGCTTGT 173222 Query 69000 CTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAG 69059 || | ||| ||| |||||| ||||| || || | ||| || | ||||| Sbjct 173221 TTCCAGGGCAGCGTGATAAATGGTTTCAAAGATTTGGCGATTTAGCTTAAACGCTTCGGC 173162 Query 69060 ACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | ||||| |||||| | | | |||||| |||||||| | |||||| || || || || Sbjct 173161 AGATTCGAAGGGATAACGCATTAAAATAAAAGCATCTGCAAGTCCCTGCACTCCGATGCC 173102 Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATA 69170 ||||| | ||||| | |||| || || || ||| || |||| |||| Sbjct 173101 TATAGGACGATGTCGCATATTCGATGTTCTCGC--CTGCAAAAGGAAAATA 173053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686873115087840