Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq413 122 7e-23 >seq413 Length=48931 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 60682 TTTATCTACCACAGGAAAATGAAGCAATTAATGATAAGTCAGGATATGCAAACTCTGTAA 60741 ||||| |||||||||||||||||| ||||||||||| |||| ||||| || | | Sbjct 7723 TTTATTTACCACAGGAAAATGAAGGGATTAATGATAAATCAGCGTATGCTGACAGTAAGA 7782 Query 60742 TGATTGCAGAAGCTGATACAAATGAACTGTTGAGTTCTGACTTTATTGTAGCTGTCCTAG 60801 |||| || || ||||| | || | |||| ||| || || || || | ||| Sbjct 7783 TGATCGCTCTTGCCGATACCGAAGAGGTTTTGAAAAGTGATTTGATGGTGGCGTTGTTAG 7842 Query 60802 ACGGTGCAACAATTGATGTTGGTGTAGCTAGTGAAATTGGAGTTGCTTATGCTAAAGGCA 60861 | || || ||||||| || |||||| ||||| || || ||||| || ||||||| Sbjct 7843 ATGGATTGACCATTGATGCAGGCGTAGCTTCCGAAATCGGTGTCGCTTACGCGAAAGGCA 7902 Query 60862 TTCCAGTTATTGGTCTGTATTCAGATTCACGTCAA 60896 |||| |||||||| ||||| ||||||| |||||| Sbjct 7903 TTCCTGTTATTGGATTGTATACAGATTCTCGTCAA 7937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415879734104604