Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq732 95.1 1e-14 >seq732 Length=24842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 202/298 (68%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 41513 GATGTCAGGATACATTCTTTTACTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41572 ||| || |||||||| | || ||||| ||||| || || ||||| || || || ||||| Sbjct 448 GATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTT 389 Query 41573 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGTTTAGGGAAAA 41631 ||||||| |||| | | | || | ||| || || || | | || ||||| ||||| | Sbjct 388 CGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACA 330 Query 41632 TAGGAGTTATCCCGTCACGACCAAGGCCTTTAATACGATTTTTCAGAATTGCTTTCTGAA 41691 | |||| | | || ||| |||||| ||||| || ||| || | || ||||| Sbjct 329 CCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAA 270 Query 41692 TCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTT 41748 ||| || ||| |||| || ||| |||||| || |||||||| ||||| | Sbjct 269 TCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCT 213 Query 41749 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 41806 | ||||| | | || || |||||||| || || | ||||| |||||||| Sbjct 212 GACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534170648393120