Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq223 87.8 2e-12 >seq223 Length=82600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162 ||||||||||| |||| || |||||||| || || || | ||||| ||||| || | Sbjct 41781 GTTTACCGGCGAAAATCAGGCGCTGTTGGTCGGGTGGTATCCCCTCCTTATCTTGAATTT 41840 Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222 | | || | | | || | || || | | || ||||| || || || | |||||| | Sbjct 41841 TCGTCTTTACGTTCTCGATCGTATCCGACGGCTCGACTTCCAGGGTGATTGTTTTGCCAG 41900 Query 27223 TCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||||||||||||||||||||| Sbjct 41901 TTAGAGTTTTCACAAAGATTTGCATA 41926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| || |||| | ||| |||||||| || || | ||| || ||||| || ||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGG 42125 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||||| | |||| | |||||| | | || ||||| || ||||| | ||| || || | Sbjct 42126 CTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTA 42185 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 |||||||||||| |||||||| Sbjct 42186 AAGTTTTCACAAAAATTTGCAT 42207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424912876541472