Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq732 84.2 2e-11 >seq732 Length=24842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 199/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 41613 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTC 41672 ||||| |||||||| | |||||||||||||| || || ||||| || || || |||||| Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388 Query 41673 GGATCGTCTTTGTAAAGATTAACGCCTTCTTCGACGAACATA-ACAAGCTTAGGAAAAAT 41731 |||||| |||| | | | || | || || ||| || | || || || || || | Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACAC 329 Query 41732 AGGAGTTATCCCGTCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41791 | |||| | | || |||||| ||| ||||| || ||| || | || |||||| Sbjct 328 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAAT 269 Query 41792 CATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 41848 || || ||| |||| || || |||||| || |||||||| || || || Sbjct 268 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212 Query 41849 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 41905 ||||| | | || || |||||||| || || | ||||| |||||||| Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535636172255200