Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_027984.1
Length=57677
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 293 9e-75
>seq1066
Length=13853
Score = 293 bits (324), Expect = 9e-75
Identities = 222/262 (85%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 19325 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCAACACGGTAATGTCAGAATATCA 19384
||||| ||| |||||||||| ||| |||| ||||| |||||||| |||||||||||||||
Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883
Query 19385 ATAGAACGTCTGGCAAAGCGTGGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAAT 19444
||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| ||
Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823
Query 19445 AAACAAACAATTAGCCCTAACAAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGT 19504
||||| || |||||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCACAAACGCATATATTTTCGAAGGCGAACAAGGC 9763
Query 19505 AAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTT 19564
|| || |||||||| ||||||||||| || | | ||||||||||| || ||||| ||
Sbjct 9762 AAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCCTGGTA 9703
Query 19565 GACCGCTGGCGAGAACTCGAAG 19586
|| || ||||| ||||| ||||
Sbjct 9702 GATCGTTGGCGCGAACTGGAAG 9681
Score = 284 bits (314), Expect = 4e-72
Identities = 250/313 (80%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 21528 GTCAAAGCAGCAATGGCGCTAGGGCGTCGTGCAATTGGCGTTGAGCTGGAGAGCGGGCGT 21587
||||||||||| |||||||| ||||||||||||||||| || ||||||||| | |||
Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351
Query 21588 TTTGAGCAGACGGTCAGGGAAGTTCAGAATGTAGTCAGTCAGAACGGATGATATTGCAGG 21647
||||||||||| | || || || |||||| | |||| ||| | ||||||||| |
Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291
Query 21648 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 21707
||| || ||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231
Query 21708 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 21767
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179
Query 21768 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 21827
|| ||||||||| ||| ||||| || ||||| ||| || | | ||| ||||||||||||
Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119
Query 21828 CGATGGCGGTCCA 21840
|| ||| || |||
Sbjct 118 CGGTGGTGGGCCA 106
Score = 114 bits (126), Expect = 5e-21
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 20800 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTAT 20859
|||||||||||||| | ||||||||| || ||||||||||||| ||||||||| |
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 20860 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 20919
|||||||| |||||| | ||||||| || ||||||||| | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 20920 AAATCACGTCCACAGTGCTGTGACGATGATG 20950
||||| || || || || | || || ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906
Score = 87.8 bits (96), Expect = 7e-13
Identities = 151/206 (73%), Gaps = 15/206 (7%)
Strand=Plus/Minus
Query 18311 AAATCTGGCGTCGGGATTAGCACCCCGGATATCGAA-ACGGTGCATA-AC--CGCGCTGG 18366
||| | || | ||||||| |||||||||| || || | || | ||| || ||||| |
Sbjct 8281 AAAACGGGTGCCGGGATTTGCACCCCGGA-ATTGATCAAGGCG-ATATACGACGCGCCAG 8224
Query 18367 CGG-TTTTTTATGCGCTAAGCACAGTCACATTCGCGATTTATGGCGGGCTGTGTGGGGGA 18425
|| |||||||| | | || || ||| | || |||||| |||||| | |||||
Sbjct 8223 CGTCTTTTTTATCGTCCACGCTCACGCACG--CCAGAATTATGGTGGGCTGGGCAGGGGA 8166
Query 18426 GCCGAAAGGCTCGCCGGATGTTTCGA---CCGGTAGTGCTAACCCCGCACAGTTCGCCAC 18482
||||||||||||||||| | | || |||||||||| ||||| | |||| ||||||
Sbjct 8165 GCCGAAAGGCTCGCCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCAC 8106
Query 18483 CA-CGATGATTAGCACCTGACGGTGG 18507
|| ||| |||| |||||| ||||||
Sbjct 8105 CAGCGA-GATTTGCACCT-CCGGTGG 8082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184435697188008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |