Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq1066 293 9e-75 >seq1066 Length=13853 Score = 293 bits (324), Expect = 9e-75 Identities = 222/262 (85%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 19325 ATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCAACACGGTAATGTCAGAATATCA 19384 ||||| ||| |||||||||| ||| |||| ||||| |||||||| ||||||||||||||| Sbjct 9942 ATGACCAGCGTTGAAATCGCAGAGCTGGTTGGAAGTCAACACGGCAATGTCAGAATATCA 9883 Query 19385 ATAGAACGTCTGGCAAAGCGTGGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAAT 19444 ||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| || Sbjct 9882 ATAGAGCGTCTGGCAAAACGCGGGGTGATTCAACTTCCTGCAATGCAAAAAGTTGAGAAC 9823 Query 19445 AAACAAACAATTAGCCCTAACAAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGT 19504 ||||| || |||||| ||||||||||||| || ||||| ||||||||||||||||| Sbjct 9822 GAACAATCATTTAGCCAAAACAAATTCACAAACGCATATATTTTCGAAGGCGAACAAGGC 9763 Query 19505 AAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCGCCGGAATTCACCGCTCGCCTTGTT 19564 || || |||||||| ||||||||||| || | | ||||||||||| || ||||| || Sbjct 9762 AAACGCGACAGCATCATTGTCGTCGCACAACTTTGCCCGGAATTCACTGCCCGCCTGGTA 9703 Query 19565 GACCGCTGGCGAGAACTCGAAG 19586 || || ||||| ||||| |||| Sbjct 9702 GATCGTTGGCGCGAACTGGAAG 9681 Score = 284 bits (314), Expect = 4e-72 Identities = 250/313 (80%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 21528 GTCAAAGCAGCAATGGCGCTAGGGCGTCGTGCAATTGGCGTTGAGCTGGAGAGCGGGCGT 21587 ||||||||||| |||||||| ||||||||||||||||| || ||||||||| | ||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 21588 TTTGAGCAGACGGTCAGGGAAGTTCAGAATGTAGTCAGTCAGAACGGATGATATTGCAGG 21647 ||||||||||| | || || || |||||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 21648 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 21707 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 21708 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 21767 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 21768 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 21827 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 21828 CGATGGCGGTCCA 21840 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 114 bits (126), Expect = 5e-21 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20800 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACTAT 20859 |||||||||||||| | ||||||||| || ||||||||||||| ||||||||| | Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 20860 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 20919 |||||||| |||||| | ||||||| || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 20920 AAATCACGTCCACAGTGCTGTGACGATGATG 20950 ||||| || || || || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Score = 87.8 bits (96), Expect = 7e-13 Identities = 151/206 (73%), Gaps = 15/206 (7%) Strand=Plus/Minus Query 18311 AAATCTGGCGTCGGGATTAGCACCCCGGATATCGAA-ACGGTGCATA-AC--CGCGCTGG 18366 ||| | || | ||||||| |||||||||| || || | || | ||| || ||||| | Sbjct 8281 AAAACGGGTGCCGGGATTTGCACCCCGGA-ATTGATCAAGGCG-ATATACGACGCGCCAG 8224 Query 18367 CGG-TTTTTTATGCGCTAAGCACAGTCACATTCGCGATTTATGGCGGGCTGTGTGGGGGA 18425 || |||||||| | | || || ||| | || |||||| |||||| | ||||| Sbjct 8223 CGTCTTTTTTATCGTCCACGCTCACGCACG--CCAGAATTATGGTGGGCTGGGCAGGGGA 8166 Query 18426 GCCGAAAGGCTCGCCGGATGTTTCGA---CCGGTAGTGCTAACCCCGCACAGTTCGCCAC 18482 ||||||||||||||||| | | || |||||||||| ||||| | |||| |||||| Sbjct 8165 GCCGAAAGGCTCGCCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCAC 8106 Query 18483 CA-CGATGATTAGCACCTGACGGTGG 18507 || ||| |||| |||||| |||||| Sbjct 8105 CAGCGA-GATTTGCACCT-CCGGTGG 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184435697188008