Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq595 358 6e-94 >seq595 Length=34093 Score = 358 bits (396), Expect = 6e-94 Identities = 314/391 (80%), Gaps = 0/391 (0%) Strand=Plus/Minus Query 57689 ATGGCGCTCCAGTCTTCCCGACCGCGGCCTGCGGCCCGCGCCAGGTTATAAACTTCACGG 57748 |||||| |||||| | |||||||| || || || |||||| || ||||||| || || Sbjct 1493 ATGGCGGACCAGTCCTGGCGACCGCGACCCGCTGCGCGCGCCTGGCTATAAACCTCCCGT 1434 Query 57749 GAGGCGGCGCCGAGCGGCATCGGTACGTGCAGTTGATTGGCGACATCCAACGCGATGCCA 57808 |||||||| || |||||||| || || ||||| || ||||||||||| | ||||||||| Sbjct 1433 GAGGCGGCCCCCAGCGGCATTGGCACATGCAGCTGGTTGGCGACATCAAGGGCGATGCCA 1374 Query 57809 AGATCTTTGTGCGCCAGATCGATCATGAAGGCGGGAGACAGATCTCCTTTCATCACTTTA 57868 ||||| || || || ||||||||||||||||||||||| |||||||| | | ||||| Sbjct 1373 AGATCCTTATGGGCAAGATCGATCATGAAGGCGGGAGAAAGATCTCCGCTGAGGACTTTG 1314 Query 57869 TTCGGCCAGGTGGTGGTGAAATGCCCTTTGCCTGCGGCAGTGCCGCTCATCACTTTTAAA 57928 || ||||||| |||||||| || ||||| || ||||| || |||||||||||||| | Sbjct 1313 TTTGGCCAGGAAGTGGTGAAGTGACCTTTACCGGCGGCGGTACCGCTCATCACTTTGACG 1254 Query 57929 GCCACGTCGAAGGAAAGCCCCAGCGCTTCACACAGCACGGCGGCTTCGGCGGAGAGCGCA 57988 || || ||||||| ||| ||| ||||| |||| ||||||||||| || || |||||| Sbjct 1253 GCAACATCGAAGGGAAGATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCA 1194 Query 57989 TTTAGCGCAATACTCATGTAGTTGTTGATCAGTTTTACGCGAATACCCATTCCCGGGCCG 58048 || ||||| || ||||||||||||||||| || || ||||| || ||||| ||||| ||| Sbjct 1193 TTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCATGCCCGGACCG 1134 Query 58049 CCGGTGTTGACCAGCTCATTACCCATCGGCA 58079 || | ||||| || |||| | ||||||| || Sbjct 1133 CCAGCGTTGATCAACTCACTGCCCATCGCCA 1103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471217118998880