Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq18 87.8 2e-12
>seq18
Length=263653
Score = 87.8 bits (96), Expect = 2e-12
Identities = 195/289 (67%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715
||||| || ||| || || |||| ||||||| | |||| || || | || ||
Sbjct 150058 GGAGATGTATAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCACCT 150117
Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775
|| | ||||| | || |||| || || | ||||| || ||||||||| | ||
Sbjct 150118 GTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATG 150177
Query 94776 GTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
| | | | | |||||| | | || || ||||| | |||||||| || ||
Sbjct 150178 GATAGCGGACAAAAAGTCAC---CATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGA 150234
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891
|||||| ||||| ||||| ||| ||| | |||| ||||| ||||| || |||||||
Sbjct 150235 GGGTATATTCTTTTCTGGAAGCTT-TGCTTCGATTTTCTGGCTAAAGAAACGTGGTCTCA 150293
Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940
||||||| ||| || ||| ||||| ||||| || || |||| |||
Sbjct 150294 TGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGGTACT 150342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583230499601440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |