Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 2e-12 >seq18 Length=263653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/289 (67%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715 ||||| || ||| || || |||| ||||||| | |||| || || | || || Sbjct 150058 GGAGATGTATAGTCTGCTGATTGACACGTATATTCAAGATGAAGCGGAACGCCACCACCT 150117 Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775 || | ||||| | || |||| || || | ||||| || ||||||||| | || Sbjct 150118 GTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATG 150177 Query 94776 GTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 | | | | | |||||| | | || || ||||| | |||||||| || || Sbjct 150178 GATAGCGGACAAAAAGTCAC---CATTCAGAGATCGACTTGTAGCATTTGCCGCCGTCGA 150234 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 |||||| ||||| ||||| ||| ||| | |||| ||||| ||||| || ||||||| Sbjct 150235 GGGTATATTCTTTTCTGGAAGCTT-TGCTTCGATTTTCTGGCTAAAGAAACGTGGTCTCA 150293 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 ||||||| ||| || ||| ||||| ||||| || || |||| ||| Sbjct 150294 TGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGGTACT 150342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583230499601440