Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq195 304 4e-77 seq223 140 1e-27 seq1195 100 9e-16 seq194 84.2 7e-11 >seq195 Length=92702 Score = 304 bits (336), Expect = 4e-77 Identities = 764/1143 (67%), Gaps = 21/1143 (2%) Strand=Plus/Minus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 |||| | ||||| ||||| |||||||| || ||| |||| || | || ||| Sbjct 11992 CGCTGTTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAA 11933 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || ||||| || || || || || ||| |||| ||||| || ||||| ||||| Sbjct 11932 GGTGGAGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTAC 11873 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 || || ||| | |||| || ||| | || || ||||| | ||| ||||| | || Sbjct 11872 GGACACGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAA 11813 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATC 349437 || ||||| || || |||||||| || || || | | |||| || || || Sbjct 11812 CACCGTTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTC 11753 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 ||| | || |||| ||||| | || | || || || | || |||| ||| | Sbjct 11752 TGACATGAAGCATTGGCCTTTCAAGGTGAT---AAGTGATGGAGGCAAGCCAAAGATTCA 11696 Query 349498 GGTTGAATATAAAGGTGA-ACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAATGGT 349554 ||| ||||| ||||| || || || | | ||||| |||||||| | | ||||| Sbjct 11695 GGTGGAATACAAAGGCGAGACGAAGA---TGTTTACTCCCGAAGAAGTCAGCGCTATGGT 11639 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||||||||||| | || ||||| ||||| || |||| || | ||||| || Sbjct 11638 GCTTGTGAAAATGAAGGAGACGGCGGAAGCTTATTTGGGCAAAACCGTGAAGGATGCCGT 11579 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || ||||| || || || || |||||| | ||| | ||||| ||||| || || | Sbjct 11578 CATCACTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTAC 11519 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||| | || || ||||| || |||| || || ||||| |||||||| ||||| || || Sbjct 11518 CATTTCTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTA 11459 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || ||||| || | || |||| |||| | || ||||| ||| | || || || Sbjct 11458 CGGCCTTGACAAGAAAGGTACTGGAGAACGAAATGTGCTCATTTTCGATCTGGGCGGCGG 11399 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || | | ||| |||| || || || |||||||| || | || || Sbjct 11398 TACCTTCGATGTGTCCATTTTGACAATTGAGGATGGTATATTTGAAGTAAAGTCTACGGC 11339 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || ||||| |||||||| || ||||| || || ||||| | || | ||||| || Sbjct 11338 AGGCGATACTCATCTTGGCGGTGAAGACTTCGACAATCGCATGGTGACCCATTTCGTGGC 11279 Query 349915 AGAATTTAAGCGTCAAGCTAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCC 349973 || || ||||| || || | || || | | || |||||| | || | ||||| Sbjct 11278 TGAGTTCAAGCGCAAAAACAAGAAAGACATGTCGGGA-AATCCTCGTGCCTTACGTCGTT 11220 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT-ATCATCTACTACCCAAACCTCTATT 350032 || | || || || ||||| || ||| | | || | | || | |||||| | || Sbjct 11219 TACGTACAGCTTGCGAACGAGCCAAGAGAACGTTAAGTAGCT-CGACCCAAGCGAGCATA 11161 Query 350033 GAAATTGATTCTCTTG-CTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 |||||||| | |||| || |||| || | | | | || || ||||| || || Sbjct 11160 GAAATTGA-TAGCTTGTACGAGGGCATCGACTATTACACGACGATCACTCGTGCCCGTTT 11102 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT-TAA 350150 ||||| | || ||| | || | | || ||||||| || | |||||| | | Sbjct 11101 CGAAGAGCTTTGCGCCGATTTGTTCCGCTCGACTTTGGATCCAGTTG-AAAAGTCTCTTC 11043 Query 350151 AAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 ||||| || || ||| |||| | | || || || || ||||||||||| || | Sbjct 11042 GCGATGCCAAGTTGGACAAGTCTCAGGTGCACGATGTTGTGTTGGTTGGTGGTTCGACCC 10983 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT--TCTAG 350268 ||||||| ||||||||| |||| || || || || ||||| |||| | || | || Sbjct 10982 GTATTCCGAAAGTTCAAAAGTTGCTGCAAGACTTCTTCAATGG-AAAGGAGCTGAACAAG 10924 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | | || ||||| || || || || || || || ||||| || ||||| ||||| | || Sbjct 10923 AGC-ATCAATCCGGACGAGGCCGTAGCTTACGGGGCTGCGGTACAGGCGGCTATTCTGTC 10865 Query 350329 TGG 350331 || Sbjct 10864 AGG 10862 Score = 113 bits (124), Expect = 1e-19 Identities = 321/489 (66%), Gaps = 12/489 (2%) Strand=Plus/Plus Query 183309 TCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCA 183368 || || ||||| || || ||| |||| | ||||| ||| ||||| | || |||||| Sbjct 10934 TCCTTTCCATTGAAGAAGTCTTGCAGCAACTTTTGAACTTTCGGAATACGGGTCGAACCA 10993 Query 183369 CCGACTAATACTACTTCATCGATATTA--CTTTTACTAATTTGTGAATCTTTTAAAACTT 183426 || || || || || || | | | | ||| | | || ||| | ||| | | | Sbjct 10994 CCAACCAACACAACATCGTGCACCTGAGACTTGTCC-AACTTG-GCATCGCGAAGAGACT 11051 Query 183427 TTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTC 183486 ||||||| || |||| ||| | || ||||| || | |||||| || | || | Sbjct 11052 TTTCAACTGGATCCAAAGTCGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCAC 11111 Query 183487 TAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTT 183546 ||| | | | || |||| || || | || ||| ||||||||| || | || Sbjct 11112 GAGTGATCGTCGTGTAATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTT 11171 Query 183547 GTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATG 183606 | || || ||| ||||| || |||||||| || ||||| | || |||||||| | Sbjct 11172 GGGTCGAGCTACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGG 11231 Query 183607 ATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTT 183666 | ||||| | | || |||| || | ||| | || || |||| | ||||| Sbjct 11232 CACGAGGATTTCCCGACATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGG- 11290 Query 183667 GAAGTAATCTTG----TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCT 183722 || | | || | || || |||||||| || | ||| |||||||| || |||| Sbjct 11291 ---GTCACCATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGAC 11347 Query 183723 TTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCC 183782 || ||||||||||| || || ||||| | ||||| || ||||| || ||||| || ||| Sbjct 11348 TTTACTTCAAATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCC 11407 Query 183783 AAATCAAAA 183791 | ||| ||| Sbjct 11408 AGATCGAAA 11416 >seq223 Length=82600 Score = 140 bits (154), Expect = 1e-27 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||||||||| || || |||||||| ||||| |||||||| || || ||||||| Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || ||||| ||||| || |||| |||||| || ||||| Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || |||||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| |||| |||||| |||||||| ||||| ||||| |||||||||||||| ||| Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | || || || || ||||| || || | ||| |||||||||| Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| |||||||| |||||| Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||||||||| || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| || ||||| || ||||||||||| |||| || ||||| || || Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| || |||||||||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||||||||| || |||||||| ||||| |||||||| ||||| |||||||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || || |||||||| | ||| || || |||||||| || |||| || || |||||| Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| ||||| |||||||| Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | ||||||||||| || || || ||||| || ||||||||||| || Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || |||| || || || ||||| ||||| | ||| | ||| || ||||||| Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||||||||| Sbjct 43616 GTCTTGACAAAAATCTGCAT 43635 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || ||||| || | || || || || ||||| || || | || || || || | | Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||| || |||||| Sbjct 41336 GTTTTGACAAATATTTGCATT 41356 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| |||| || ||||||||||| ||||| |||||||| || || ||||| | | Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | || || || || ||||| || || | ||| ||||| || || Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 42472 GTTTTAACGAATATTTGCAT 42491 Score = 89.7 bits (98), Expect = 2e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| || | || ||||||||||| || || |||||||| |||| Sbjct 41919 TTTGCATACCACCACGCAAACGAAGGACAAGATGAAGTGTGCTTTCCTTTTGAATGTTAT 41978 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCC 140599 | ||||| | |||||||||||| || |||||||| || Sbjct 41979 AGTCAGAGAGTGTTCGCCCATCCTCGAGTTGTTTACC 42015 >seq1195 Length=11716 Score = 100 bits (110), Expect = 9e-16 Identities = 233/346 (67%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAA--CTTCCCCAGCACAT 130718 ||| || ||||||| || | || || || || || ||||| | | || | || | Sbjct 2822 CATGCCGTAGAACAGCATAAATTTCTCGCCGTTCTCCTCAACGATGCGACCGCCGCTC-- 2879 Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778 || || || | || | ||| || |||||||| || ||||| || || | ||||| ||| Sbjct 2880 TCTTCGTGGCCCGCCAGCATGCCGCCAAGCATGACGAAATCGGCACCGCCGCCAAAGGCT 2939 Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGC--AATAACATGTCCATTTAATC 130836 ||||| | ||| || || | | || || ||||| || | | ||| ||| | | Sbjct 2940 TTCGCCACATCGCCCGGCGTGGTGCAGCCACCATC-GCTGACGATCAT-TCCGCCCAGAC 2997 Query 130837 CATGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTA 130896 | || || ||||| ||||| || | ||||||||||| ||||| || || || ||| Sbjct 2998 CGTGCGCAGCATCGGCACATTCGATTACCGCAGAAAGTTGCGGATAACCGACGCCTGTTT 3057 Query 130897 CTTTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCCTG 130956 | || |||||||||| |||||| ||||| |||| |||||| ||||| || |||| Sbjct 3058 TGACGCGAGTTGTACAAACAGAACCTGGGCCAATGCCAACTTTAACGATATCGGCACCTG 3117 Query 130957 CTAAAATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGC 131002 | || || | || |||||| | ||| | || ||||| || Sbjct 3118 AGAGGATAAGCTCCTCACACATTTCACCAGTCACTACGTTACCAGC 3163 >seq194 Length=92744 Score = 84.2 bits (92), Expect = 7e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 379697 AATCTACACGTTTACCCATAAGATTACCTCTGACTCGACCGGTTTTACCATTAAGTCTCT 379756 |||| || | ||| |||||||| ||||||| | ||||| ||| || ||||| || | Sbjct 6851 AATCAACCCTTTTTCCCATAAGGTTACCTCGAATGCGACCTTCTTTGCCTTTAAGCCTTT 6910 Query 379757 CTTTAATAGACTTTAATGGCCGACCAGATCGCTGAGCAACAGCTGCTACCCCAGGTATTT 379816 || | ||||| |||||||| |||||| || | | | | || ||||||||||| Sbjct 6911 GCTTTAGCGACTTCAATGGCCGGCCAGATTTATGCGTAGCTCGAGGTATCCCAGGTATTT 6970 Query 379817 TATTATCAACTAGAGTAGCAATATAATATTGTAATA 379852 |||||||| || ||| || | | |||||| |||| Sbjct 6971 CATTATCAATTAAAGTGGCCACGTGATATTGCAATA 7006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515173714597268