Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq195 304 4e-77
seq223 140 1e-27
seq1195 100 9e-16
seq194 84.2 7e-11
>seq195
Length=92702
Score = 304 bits (336), Expect = 4e-77
Identities = 764/1143 (67%), Gaps = 21/1143 (2%)
Strand=Plus/Minus
Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257
|||| | ||||| ||||| |||||||| || ||| |||| || | || |||
Sbjct 11992 CGCTGTTGGAATTGATTTGGGTACTACGTACAGTTGCGTTGGCGTATTTCAGCATGGAAA 11933
Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317
|| || ||||| || || || || || ||| |||| ||||| || ||||| |||||
Sbjct 11932 GGTGGAGATAATAGCCAACGACCAGGGCAACCGAACTACGCCGAGCTATGTTGCTTTTAC 11873
Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377
|| || ||| | |||| || ||| | || || ||||| | ||| ||||| | ||
Sbjct 11872 GGACACGGAGAGGCTGATCGGCGATGCCGCCAAGAATCAGGTGGCTTTAAATCCCCACAA 11813
Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATC 349437
|| ||||| || || |||||||| || || || | | |||| || || ||
Sbjct 11812 CACCGTTTTCGACGCGAAGCGACTGATCGGGCGACGATACGATGACTCCGCTGTGCAGTC 11753
Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497
||| | || |||| ||||| | || | || || || | || |||| ||| |
Sbjct 11752 TGACATGAAGCATTGGCCTTTCAAGGTGAT---AAGTGATGGAGGCAAGCCAAAGATTCA 11696
Query 349498 GGTTGAATATAAAGGTGA-ACAAAAACAATTTTTAC--CCGAAGAAATTTCATCAATGGT 349554
||| ||||| ||||| || || || | | ||||| |||||||| | | |||||
Sbjct 11695 GGTGGAATACAAAGGCGAGACGAAGA---TGTTTACTCCCGAAGAAGTCAGCGCTATGGT 11639
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
| || ||||||||||| | || ||||| ||||| || |||| || | ||||| ||
Sbjct 11638 GCTTGTGAAAATGAAGGAGACGGCGGAAGCTTATTTGGGCAAAACCGTGAAGGATGCCGT 11579
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
|| ||||| || || || || |||||| | ||| | ||||| ||||| || || |
Sbjct 11578 CATCACTGTTCCGGCATACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCCGGTAC 11519
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
|||| | || || ||||| || |||| || || ||||| |||||||| ||||| || ||
Sbjct 11518 CATTTCTGGATTGAATGTCCTTCGAATTATCAACGAACCAACTGCTGCTGCAATCGCTTA 11459
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
|| ||||| || | || |||| |||| | || ||||| ||| | || || ||
Sbjct 11458 CGGCCTTGACAAGAAAGGTACTGGAGAACGAAATGTGCTCATTTTCGATCTGGGCGGCGG 11399
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || | | ||| |||| || || || |||||||| || | || ||
Sbjct 11398 TACCTTCGATGTGTCCATTTTGACAATTGAGGATGGTATATTTGAAGTAAAGTCTACGGC 11339
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
|| ||||| |||||||| || ||||| || || ||||| | || | ||||| ||
Sbjct 11338 AGGCGATACTCATCTTGGCGGTGAAGACTTCGACAATCGCATGGTGACCCATTTCGTGGC 11279
Query 349915 AGAATTTAAGCGTCAAGCTAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCC 349973
|| || ||||| || || | || || | | || |||||| | || | |||||
Sbjct 11278 TGAGTTCAAGCGCAAAAACAAGAAAGACATGTCGGGA-AATCCTCGTGCCTTACGTCGTT 11220
Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT-ATCATCTACTACCCAAACCTCTATT 350032
|| | || || || ||||| || ||| | | || | | || | |||||| | ||
Sbjct 11219 TACGTACAGCTTGCGAACGAGCCAAGAGAACGTTAAGTAGCT-CGACCCAAGCGAGCATA 11161
Query 350033 GAAATTGATTCTCTTG-CTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091
|||||||| | |||| || |||| || | | | | || || ||||| || ||
Sbjct 11160 GAAATTGA-TAGCTTGTACGAGGGCATCGACTATTACACGACGATCACTCGTGCCCGTTT 11102
Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT-TAA 350150
||||| | || ||| | || | | || ||||||| || | |||||| | |
Sbjct 11101 CGAAGAGCTTTGCGCCGATTTGTTCCGCTCGACTTTGGATCCAGTTG-AAAAGTCTCTTC 11043
Query 350151 AAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210
||||| || || ||| |||| | | || || || || ||||||||||| || |
Sbjct 11042 GCGATGCCAAGTTGGACAAGTCTCAGGTGCACGATGTTGTGTTGGTTGGTGGTTCGACCC 10983
Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT--TCTAG 350268
||||||| ||||||||| |||| || || || || ||||| |||| | || | ||
Sbjct 10982 GTATTCCGAAAGTTCAAAAGTTGCTGCAAGACTTCTTCAATGG-AAAGGAGCTGAACAAG 10924
Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328
| | || ||||| || || || || || || || ||||| || ||||| ||||| | ||
Sbjct 10923 AGC-ATCAATCCGGACGAGGCCGTAGCTTACGGGGCTGCGGTACAGGCGGCTATTCTGTC 10865
Query 350329 TGG 350331
||
Sbjct 10864 AGG 10862
Score = 113 bits (124), Expect = 1e-19
Identities = 321/489 (66%), Gaps = 12/489 (2%)
Strand=Plus/Plus
Query 183309 TCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCA 183368
|| || ||||| || || ||| |||| | ||||| ||| ||||| | || ||||||
Sbjct 10934 TCCTTTCCATTGAAGAAGTCTTGCAGCAACTTTTGAACTTTCGGAATACGGGTCGAACCA 10993
Query 183369 CCGACTAATACTACTTCATCGATATTA--CTTTTACTAATTTGTGAATCTTTTAAAACTT 183426
|| || || || || || | | | | ||| | | || ||| | ||| | | |
Sbjct 10994 CCAACCAACACAACATCGTGCACCTGAGACTTGTCC-AACTTG-GCATCGCGAAGAGACT 11051
Query 183427 TTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTC 183486
||||||| || |||| ||| | || ||||| || | |||||| || | || |
Sbjct 11052 TTTCAACTGGATCCAAAGTCGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCAC 11111
Query 183487 TAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTT 183546
||| | | | || |||| || || | || ||| ||||||||| || | ||
Sbjct 11112 GAGTGATCGTCGTGTAATAGTCGATGCCCTCGTACAAGCTATCAATTTCTATGCTCGCTT 11171
Query 183547 GTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATG 183606
| || || ||| ||||| || |||||||| || ||||| | || |||||||| |
Sbjct 11172 GGGTCGAGCTACTTAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGTAAACGACGTAAGG 11231
Query 183607 ATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTT 183666
| ||||| | | || |||| || | ||| | || || |||| | |||||
Sbjct 11232 CACGAGGATTTCCCGACATGTCTTTCTTGTTTTTGCGCTTGAACTCAGCCACGAAATGG- 11290
Query 183667 GAAGTAATCTTG----TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCT 183722
|| | | || | || || |||||||| || | ||| |||||||| || ||||
Sbjct 11291 ---GTCACCATGCGATTGTCGAAGTCTTCACCGCCAAGATGAGTATCGCCTGCCGTAGAC 11347
Query 183723 TTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCC 183782
|| ||||||||||| || || ||||| | ||||| || ||||| || ||||| || |||
Sbjct 11348 TTTACTTCAAATATACCATCCTCAATTGTCAAAATGGACACATCGAAGGTACCGCCGCCC 11407
Query 183783 AAATCAAAA 183791
| ||| |||
Sbjct 11408 AGATCGAAA 11416
>seq223
Length=82600
Score = 140 bits (154), Expect = 1e-27
Identities = 115/140 (82%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||||||||| || || |||||||| ||||| |||||||| || || |||||||
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || ||||| ||||| || |||| |||||| || |||||
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || ||||||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| |||| |||||| |||||||| ||||| ||||| |||||||||||||| |||
Sbjct 42068 CCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCT 42127
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | || || || || ||||| || || | ||| ||||||||||
Sbjct 42128 TTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAA 42187
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| |||||||| ||||||
Sbjct 42188 GTTTTCACAAAAATTTGCATT 42208
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||||||||| || ||||| |||||||| ||||| ||||| |||||||||
Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| || ||||| || ||||||||||| |||| || ||||| || ||
Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| || ||||||||||||
Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917
Score = 136 bits (150), Expect = 1e-26
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || ||||||||||| || |||||||| ||||| |||||||| ||||| ||||||||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGAATTTTC 43256
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || || |||||||| | ||| || || |||||||| || |||| || || ||||||
Sbjct 43257 GTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGTT 43316
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| ||||| ||||||||
Sbjct 43317 AGCGTTTTCACAAATATCTGCAT 43339
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| | ||||||||||| || || || ||||| || ||||||||||| ||
Sbjct 43496 CCGGCGAAGATCAACCGTTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGAATTTTTGCC 43555
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
||||| || |||| || || || ||||| ||||| | ||| | ||| || |||||||
Sbjct 43556 TTTACGTTCTCAACCGTGTCCGAAGGTTCCACTTCTAATGTTATTGTTTTGCCGGTTAAA 43615
Query 140718 GTTTTTACAAAAATCTGCAT 140737
|| || ||||||||||||||
Sbjct 43616 GTCTTGACAAAAATCTGCAT 43635
Score = 111 bits (122), Expect = 5e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| ||||| || ||||| |||||||||||||||||||||||||| ||||| || || ||
Sbjct 41216 CCGGCAAAAATCAGACGCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGTATCTTGGCC 41275
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || ||||| || | || || || || ||||| || || | || || || || | |
Sbjct 41276 TTCACGTTATCGATAGTGTCCGAAGGCTCCACTTCGAGAGTTATAGTTTTGCCTGTCAAT 41335
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| ||||| || ||||||
Sbjct 41336 GTTTTGACAAATATTTGCATT 41356
Score = 104 bits (114), Expect = 7e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| |||| || ||||||||||| ||||| |||||||| || || ||||| | |
Sbjct 42352 CCAGCAAAAATTAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGTATTTTTGTT 42411
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | || || || || ||||| || || | ||| ||||| || ||
Sbjct 42412 TTAACGTTTTCAATGGTGTCTGACGGCTCCACTTCGAGGGTGATTGTTTTTCCAGTAAGC 42471
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || || |||||
Sbjct 42472 GTTTTAACGAATATTTGCAT 42491
Score = 89.7 bits (98), Expect = 2e-12
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| || | || ||||||||||| || || |||||||| ||||
Sbjct 41919 TTTGCATACCACCACGCAAACGAAGGACAAGATGAAGTGTGCTTTCCTTTTGAATGTTAT 41978
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCC 140599
| ||||| | |||||||||||| || |||||||| ||
Sbjct 41979 AGTCAGAGAGTGTTCGCCCATCCTCGAGTTGTTTACC 42015
>seq1195
Length=11716
Score = 100 bits (110), Expect = 9e-16
Identities = 233/346 (67%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAA--CTTCCCCAGCACAT 130718
||| || ||||||| || | || || || || || ||||| | | || | || |
Sbjct 2822 CATGCCGTAGAACAGCATAAATTTCTCGCCGTTCTCCTCAACGATGCGACCGCCGCTC-- 2879
Query 130719 TCATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCT 130778
|| || || | || | ||| || |||||||| || ||||| || || | ||||| |||
Sbjct 2880 TCTTCGTGGCCCGCCAGCATGCCGCCAAGCATGACGAAATCGGCACCGCCGCCAAAGGCT 2939
Query 130779 TTCGCAATATCCCCGGGAGATTTACAACCCCCATCAGC--AATAACATGTCCATTTAATC 130836
||||| | ||| || || | | || || ||||| || | | ||| ||| | |
Sbjct 2940 TTCGCCACATCGCCCGGCGTGGTGCAGCCACCATC-GCTGACGATCAT-TCCGCCCAGAC 2997
Query 130837 CATGTGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTA 130896
| || || ||||| ||||| || | ||||||||||| ||||| || || || |||
Sbjct 2998 CGTGCGCAGCATCGGCACATTCGATTACCGCAGAAAGTTGCGGATAACCGACGCCTGTTT 3057
Query 130897 CTTTTCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCCTG 130956
| || |||||||||| |||||| ||||| |||| |||||| ||||| || ||||
Sbjct 3058 TGACGCGAGTTGTACAAACAGAACCTGGGCCAATGCCAACTTTAACGATATCGGCACCTG 3117
Query 130957 CTAAAATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGC 131002
| || || | || |||||| | ||| | || ||||| ||
Sbjct 3118 AGAGGATAAGCTCCTCACACATTTCACCAGTCACTACGTTACCAGC 3163
>seq194
Length=92744
Score = 84.2 bits (92), Expect = 7e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 379697 AATCTACACGTTTACCCATAAGATTACCTCTGACTCGACCGGTTTTACCATTAAGTCTCT 379756
|||| || | ||| |||||||| ||||||| | ||||| ||| || ||||| || |
Sbjct 6851 AATCAACCCTTTTTCCCATAAGGTTACCTCGAATGCGACCTTCTTTGCCTTTAAGCCTTT 6910
Query 379757 CTTTAATAGACTTTAATGGCCGACCAGATCGCTGAGCAACAGCTGCTACCCCAGGTATTT 379816
|| | ||||| |||||||| |||||| || | | | | || |||||||||||
Sbjct 6911 GCTTTAGCGACTTCAATGGCCGGCCAGATTTATGCGTAGCTCGAGGTATCCCAGGTATTT 6970
Query 379817 TATTATCAACTAGAGTAGCAATATAATATTGTAATA 379852
|||||||| || ||| || | | |||||| ||||
Sbjct 6971 CATTATCAATTAAAGTGGCCACGTGATATTGCAATA 7006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515173714597268
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