Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq63 86.0 7e-12 >seq63 Length=178715 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 19167 AGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACG 19226 ||||||| |||| ||| | || | || || ||||| |||| |||||||| ||| Sbjct 170719 AGACATATAACCTAATGTCAGAAAAATGGTTTACCCACGCTTCGCCTACCCTTTTTAACT 170778 Query 19227 CCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCA 19286 | || || ||| || ||| || || || || || | | ||||||| ||||||| Sbjct 170779 CTGGAACTTGCAAGCCACAGTTGAGTAGTTGCTTTCTGCTCACAATGAAGGCGGACAGCA 170838 Query 19287 TTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCG 19321 ||||||| |||||||| |||||||| || |||||| Sbjct 170839 TTGAGGGAATCTACGATACGCTCAAAGAATGCGCG 170873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548496304136640