Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq199 120 3e-22
seq215 111 2e-19
>seq199
Length=91904
Score = 120 bits (132), Expect = 3e-22
Identities = 186/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| | || ||| || | || || || || |||||||| ||||||||
Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | ||| || ||||| | |||||| || |||||||| || ||||||||||||
Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|||||| | | ||| || || || || ||||| | | | || || || | ||
Sbjct 69941 ATCGTAGCCATCAAGCTAGCTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACCG 69882
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
||||||||||| ||||| | ||| | | ||| ||||| ||||| ||| | |||
Sbjct 69881 GCCAGCTGAGCAACCTTGACTTCTCGCTTGTCGTTTCGCTTGAAGCAGGTATACAAAACC 69822
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| | ||||||| ||| ||
Sbjct 69821 TTCCGCTGNCCAGGCTTCAAACCGTC 69796
Score = 100 bits (110), Expect = 3e-16
Identities = 187/273 (68%), Gaps = 4/273 (1%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||||||||||| | ||| |||| || || || ||| ||| ||||| || || ||
Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || ||||||| |||||| || || || || || ||||| || |||
Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208
||||| || || || ||||| ||||| ||||| | | | || || | | ||
Sbjct 69941 ATCGTAGCCATCAAGCTAGCTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACCG 69882
Query 152209 GCCAACTGCGCCACCTT--CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266
|||| ||| || ||||| | | || | ||| ||| ||||| |||| || | |
Sbjct 69881 GCCAGCTGAGCAACCTTGACTTCTCGCTTGTC--GTTTCGCTTGAAGCAGGTATACAAAA 69824
Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299
|||| ||||| || ||||||||||| ||||
Sbjct 69823 CCTTCCGCTGNCCAGGCTTCAAACCGTCAACCA 69791
>seq215
Length=85622
Score = 111 bits (122), Expect = 2e-19
Identities = 187/268 (70%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATT 117362
||||||||| || | | || ||||||||||||||||| |||| ||| ||||||||||
Sbjct 40931 AGTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAA-ACGAGTACCGAATT 40989
Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422
| ||| ||| || ||||| | ||||||| ||||||||||| || ||||| || |
Sbjct 40990 GGCCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTA 41049
Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
||| || || ||||| || || || || ||||| || | || || || | |
Sbjct 41050 TAATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAAC 41109
Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542
| |||| ||||||||| |||| ||| | | ||| ||||| ||| | | || |
Sbjct 41110 CGGCCAACTGAGCCACTTTCACTTCTCGCTTGTCGTTACGCTTGAAGCAAGTGAACATTA 41169
Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570
| || | |||| ||||| | ||||||
Sbjct 41170 CTTTTCTTTGACCAGGCTTTAAACCATC 41197
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || |||| | || || ||||||||||||||| || || || || || ||
Sbjct 40932 GTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAAACGAGTACCGAATTGG 40991
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||| || ||||||| ||||||| |||||| || | || |||||||| | |
Sbjct 40992 CCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTATA 41051
Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208
|| || ||| || || ||||| ||||| ||||| || | || || | | ||
Sbjct 41052 ATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAACCG 41111
Query 152209 GCCAACTGCGCCACCTTCA 152227
|||||||| ||||| ||||
Sbjct 41112 GCCAACTGAGCCACTTTCA 41130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547187572128800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |