Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq199 120 3e-22 seq215 111 2e-19 >seq199 Length=91904 Score = 120 bits (132), Expect = 3e-22 Identities = 186/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| | || ||| || | || || || || |||||||| |||||||| Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| || ||||| | |||||| || |||||||| || |||||||||||| Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 |||||| | | ||| || || || || ||||| | | | || || || | || Sbjct 69941 ATCGTAGCCATCAAGCTAGCTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACCG 69882 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||||||||||| ||||| | ||| | | ||| ||||| ||||| ||| | ||| Sbjct 69881 GCCAGCTGAGCAACCTTGACTTCTCGCTTGTCGTTTCGCTTGAAGCAGGTATACAAAACC 69822 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||| | ||||||| ||| || Sbjct 69821 TTCCGCTGNCCAGGCTTCAAACCGTC 69796 Score = 100 bits (110), Expect = 3e-16 Identities = 187/273 (68%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||||| | ||| |||| || || || ||| ||| ||||| || || || Sbjct 70061 GTGAAGATGTATCTAGGGCTAGCCGAGTCTTTCCCGCCTTGCAGACGCGTGCCGAATTGA 70002 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||||| |||||| || || || || || ||||| || ||| Sbjct 70001 CCAATGGGCAACAGCAGGTTGATATTGTTGCTTCCGACAAAGTTGTGCGCCAAGTTGACA 69942 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||| || || || ||||| ||||| ||||| | | | || || | | || Sbjct 69941 ATCGTAGCCATCAAGCTAGCTTCGCCGTGATGATAGGAAGACATTTCGGCAACCGAACCG 69882 Query 152209 GCCAACTGCGCCACCTT--CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||| ||| || ||||| | | || | ||| ||| ||||| |||| || | | Sbjct 69881 GCCAGCTGAGCAACCTTGACTTCTCGCTTGTC--GTTTCGCTTGAAGCAGGTATACAAAA 69824 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299 |||| ||||| || ||||||||||| |||| Sbjct 69823 CCTTCCGCTGNCCAGGCTTCAAACCGTCAACCA 69791 >seq215 Length=85622 Score = 111 bits (122), Expect = 2e-19 Identities = 187/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATT 117362 ||||||||| || | | || ||||||||||||||||| |||| ||| |||||||||| Sbjct 40931 AGTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAA-ACGAGTACCGAATT 40989 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | ||| ||| || ||||| | ||||||| ||||||||||| || ||||| || | Sbjct 40990 GGCCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTA 41049 Query 117423 CAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 ||| || || ||||| || || || || ||||| || | || || || | | Sbjct 41050 TAATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAAC 41109 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | |||| ||||||||| |||| ||| | | ||| ||||| ||| | | || | Sbjct 41110 CGGCCAACTGAGCCACTTTCACTTCTCGCTTGTCGTTACGCTTGAAGCAAGTGAACATTA 41169 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || | |||| ||||| | |||||| Sbjct 41170 CTTTTCTTTGACCAGGCTTTAAACCATC 41197 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || |||| | || || ||||||||||||||| || || || || || || Sbjct 40932 GTGAAAATATATCTTGCACTAGCAGCATCCTTGCCACCTTGCAAACGAGTACCGAATTGG 40991 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| || ||||||| ||||||| |||||| || | || |||||||| | | Sbjct 40992 CCAACAGGCAGCAGTAGGTTGACGTTGTTGCTGCCCACAAAGTCGTGCGCCAAATTTATA 41051 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || ||| || || ||||| ||||| ||||| || | || || | | || Sbjct 41052 ATAGTTCCCATAAGGCTTGCTTCGCCGTGATGATAAGCGGAAGTTTCGGCAACTGAACCG 41111 Query 152209 GCCAACTGCGCCACCTTCA 152227 |||||||| ||||| |||| Sbjct 41112 GCCAACTGAGCCACTTTCA 41130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547187572128800