Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq223 116 4e-21
seq18 87.8 2e-12
>seq223
Length=82600
Score = 116 bits (128), Expect = 4e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || |||||||| | || ||||||||||| |||||||| || ||| |
Sbjct 43059 AATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTC 43000
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | ||| |||| ||||| ||||| || || ||||| || |||||
Sbjct 42999 AGACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCA 42940
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
||||||||| || || || |||||
Sbjct 42939 GCAGCGTCTTATCTTCGCAGGTAA 42916
Score = 109 bits (120), Expect = 6e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| |||||||| || | || ||||| ||||| ||||| || || ||| |
Sbjct 41356 AATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTC 41297
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || ||||||| || || |||||||| || ||||||||||| || ||
Sbjct 41296 GGACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCA 41237
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||||||||| |||||||| ||||
Sbjct 41236 GCAGCGTCTGATTTTTGCCGGTA 41214
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || ||||| || || |||||||||||| | || || ||| |
Sbjct 41638 AATGCAGATATTCGTGAAAACGCTGACAGGGAAGACTATTACTTTGGAAGTGGAGCCTTC 41579
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | |||| | ||||| || || || ||||| ||||| || || ||||| ||
Sbjct 41578 GGATACCATAGAAAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCAGATCA 41519
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
|||||| |||||||||| |||||
Sbjct 41518 GCAGCGATTAATTTTTGCAGGTAA 41495
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || ||||| || || || || ||||| ||||| |||||| |
Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| |||| |||| ||||| ||||||||| || ||||| || |||||||| || ||
Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549
||||||||||| || || ||| ||
Sbjct 43797 ACAGCGTCTAATCTTCGCAGGTTAG 43773
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| || || | ||||| || || || || || || || ||| |
Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| |||| || ||||||||||| ||||| || ||||| || || ||
Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCA 42089
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
|| ||| |||||||||||||||
Sbjct 42088 ACAACGTTTAATTTTTGCTGGTA 42066
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || || || ||||| || || || || || || ||| |
Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| | |||||||| || |||||||| || || || |||||
Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCGACCAA 41806
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
||||| || ||||| || |||||
Sbjct 41805 CAGCGCCTGATTTTCGCCGGTAA 41783
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || |||||||| || || || || || || || || ||| |
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || | ||||| || ||||| || || ||||| || || |||
Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
||||| ||||||||||||||
Sbjct 42371 CAGCGATTAATTTTTGCTGGT 42351
>seq18
Length=263653
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 64323 GGAGCT-TTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCCA 64381
|||||| |||||| |||||| || || |||||||| ||||||||||| || ||
Sbjct 149753 GGAGCTATTACAAAAAAGCCGAGGCTTCATTTTGGACGGTTGAGGAGGTTGACCTTAGCA 149812
Query 64382 AGGATCTCAGCGACTGGGAAAACCTAAACTCACAGGAACAGCACTTCATCAAGTTGGTCC 64441
|| | | |||||||||||| || ||| | | || ||||||||||| || || |
Sbjct 149813 GAGACATGACCGACTGGGAAAAGCTGAACGCGAACGAGAAGCACTTCATCTCGTATGTAC 149872
Query 64442 TAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGG 64486
| || |||||||| | || ||||| ||||| || |||||||
Sbjct 149873 TCGCTTTCTTCGCCGCTTCCGATGGAATAGTGTTCGAAAATTTGG 149917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570280772374720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |