Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq223 116 4e-21 seq18 87.8 2e-12 >seq223 Length=82600 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| | || ||||||||||| |||||||| || ||| | Sbjct 43059 AATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTC 43000 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||| |||| ||||| ||||| || || ||||| || ||||| Sbjct 42999 AGACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCA 42940 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||||| || || || ||||| Sbjct 42939 GCAGCGTCTTATCTTCGCAGGTAA 42916 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || | || ||||| ||||| ||||| || || ||| | Sbjct 41356 AATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTC 41297 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||| || ||||||||||| || || Sbjct 41296 GGACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCA 41237 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||||||||| |||||||| |||| Sbjct 41236 GCAGCGTCTGATTTTTGCCGGTA 41214 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || ||||| || || |||||||||||| | || || ||| | Sbjct 41638 AATGCAGATATTCGTGAAAACGCTGACAGGGAAGACTATTACTTTGGAAGTGGAGCCTTC 41579 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| || || || ||||| ||||| || || ||||| || Sbjct 41578 GGATACCATAGAAAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCAGATCA 41519 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 |||||| |||||||||| ||||| Sbjct 41518 GCAGCGATTAATTTTTGCAGGTAA 41495 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || ||||| || || || || ||||| ||||| |||||| | Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| |||| ||||| ||||||||| || ||||| || |||||||| || || Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||||| || || ||| || Sbjct 43797 ACAGCGTCTAATCTTCGCAGGTTAG 43773 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | ||||| || || || || || || || ||| | Sbjct 42208 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAAACAATAACGCTGGAAGTGGAGCCGTC 42149 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| |||| || ||||||||||| ||||| || ||||| || || || Sbjct 42148 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGTATTCCACCTGATCA 42089 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 || ||| ||||||||||||||| Sbjct 42088 ACAACGTTTAATTTTTGCTGGTA 42066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || ||||| || || || || || || ||| | Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | |||||||| || |||||||| || || || ||||| Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCGACCAA 41806 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| || ||||| || ||||| Sbjct 41805 CAGCGCCTGATTTTCGCCGGTAA 41783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || |||||||| || || || || || || || || ||| | Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || | ||||| || ||||| || || ||||| || || ||| Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCAG 42372 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| |||||||||||||| Sbjct 42371 CAGCGATTAATTTTTGCTGGT 42351 >seq18 Length=263653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 64323 GGAGCT-TTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCCA 64381 |||||| |||||| |||||| || || |||||||| ||||||||||| || || Sbjct 149753 GGAGCTATTACAAAAAAGCCGAGGCTTCATTTTGGACGGTTGAGGAGGTTGACCTTAGCA 149812 Query 64382 AGGATCTCAGCGACTGGGAAAACCTAAACTCACAGGAACAGCACTTCATCAAGTTGGTCC 64441 || | | |||||||||||| || ||| | | || ||||||||||| || || | Sbjct 149813 GAGACATGACCGACTGGGAAAAGCTGAACGCGAACGAGAAGCACTTCATCTCGTATGTAC 149872 Query 64442 TAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGG 64486 | || |||||||| | || ||||| ||||| || ||||||| Sbjct 149873 TCGCTTTCTTCGCCGCTTCCGATGGAATAGTGTTCGAAAATTTGG 149917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570280772374720