Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq1627 2149 0.0 seq1947 859 0.0 seq1066 302 2e-77 seq3035 239 2e-58 >seq1627 Length=6655 Score = 2149 bits (2382), Expect = 0.0 Identities = 1263/1311 (96%), Gaps = 0/1311 (0%) Strand=Plus/Minus Query 2456 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 2515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 1315 Query 2516 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 2575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 1255 Query 2576 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 2635 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1254 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCCACTTC 1195 Query 2636 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 1135 Query 2696 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 2755 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1134 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 1075 Query 2756 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 2815 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 1074 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 1015 Query 2816 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1014 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 955 Query 2876 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 895 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 835 Query 2996 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 3055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 775 Query 3056 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 3115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 715 Query 3116 CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCA 3175 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 714 CATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCA 655 Query 3176 GACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 3235 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| Sbjct 654 GACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTT 595 Query 3236 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 3295 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 CAGCCAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 535 Query 3296 ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTA 3355 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 534 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 475 Query 3356 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 3415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 415 Query 3416 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 3475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 355 Query 3476 TCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCC 3535 ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 354 TCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCC 295 Query 3536 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 3595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 235 Query 3596 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 3655 ||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 234 TTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGA 175 Query 3656 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 3715 |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 174 ACCATACGGACTGCCCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 115 Query 3716 TTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAG 3766 ||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 114 TTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG 64 >seq1947 Length=4488 Score = 859 bits (952), Expect = 0.0 Identities = 500/516 (97%), Gaps = 0/516 (0%) Strand=Plus/Minus Query 3251 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATGGTAATACGT 3310 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4488 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGT 4429 Query 3311 TGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTT 3370 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 4428 TGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTT 4369 Query 3371 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 3430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4368 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 4309 Query 3431 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCT 3490 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4308 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGCTCCAGCTCT 4249 Query 3491 TTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCA 3550 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 4248 TTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCCCCGGTATCCCGCTCA 4189 Query 3551 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAA 3610 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4188 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGAGCAATGGAA 4129 Query 3611 CAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCC 3670 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| | ||| Sbjct 4128 CAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGGACTGCC 4069 Query 3671 CGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 3730 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4068 CGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 4009 Query 3731 GGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAG 3766 || |||||||||||||||||| |||||||||||||| Sbjct 4008 GGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG 3973 >seq1066 Length=13853 Score = 302 bits (334), Expect = 2e-77 Identities = 254/313 (81%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 26972 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 27031 ||||||||||| ||| |||||||||||||||||||||| || ||||||||| |||||||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 27032 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 27091 ||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 27092 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 27151 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 27152 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 27211 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 27212 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 27271 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 27272 CGATGGCGGTCCA 27284 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 179 bits (198), Expect = 2e-40 Identities = 203/264 (77%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 17256 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTAATA--ACCACCGCAGG 17313 |||||||| |||||||||||||||||||||||||| ||||| |||| ||||| | || Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGA--AATACTTCCACCACCGG 8088 Query 17314 AGGTGAGAAGCTCGCTGGCGGTGGACTGTACAGGGTTCTCACAACTGGCAATCAAGGGAA 17373 ||||| || |||||||| || |||||| |||||||| ||| || ||| ||||||| || Sbjct 8089 AGGTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAA 8148 Query 17374 CCAGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATG 17430 || | ||| | ||||| ||| | ||||||||||| | | ||||||| | Sbjct 8149 CCGG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCG 8205 Query 17431 TCGATACaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTGAGAA 17489 | || |||||||||||||||||||| | |||||||| ||| ||||||| || Sbjct 8206 TGGACGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAA 8265 Query 17490 TCCCGACACCCGTTTTATAAGGTG 17513 ||||| |||||||||||||||||| Sbjct 8266 TCCCGGCACCCGTTTTATAAGGTG 8289 Score = 123 bits (136), Expect = 1e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 26244 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 26303 |||||||||||||| | ||||||||| | ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 26304 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 26363 ||||||||| |||||| | |||| || || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 26364 AAATCACGCCCGCAGTGCTGTGACGATGATG 26394 ||||| |||||||| || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Score = 84.2 bits (92), Expect = 9e-12 Identities = 145/198 (73%), Gaps = 17/198 (9%) Strand=Plus/Plus Query 5350 CACCACCGTTAGGTTCGAATCATCG--GGTGGTGAGAC-GTACAGGGTTCGAACTACCGG 5406 |||||||| |||| | |||| ||| ||||| | ||| | |||||||| | |||||||| Sbjct 8080 CACCACCGG-AGGTGCAAATC-TCGCTGGTGGCG-GACTGAACAGGGTTTGCACTACCGG 8136 Query 5407 GAAACCA----ACCGGCGAGCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAGATGT 5462 | | | |||||||||| |||| |||||||| | ||||||||||||| | || Sbjct 8137 CGATCAAGGAAACCGGCGAGCCTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGT 8196 Query 5463 GCGCGTGCATACGACAATAAAAAACACGCTCGCGGCGTGTC-TCTGTCGCGGT-TTCTA- 5519 ||| | || | ||| |||||||| ||||| |||| ||| | | |||| | || | Sbjct 8197 GCGTGAGCGT-GGACGATAAAAAAGACGCT---GGCGCGTCGTATATCGCCTTGATCAAT 8252 Query 5520 TCCGGGGTTCGAATCCCG 5537 |||||||| | ||||||| Sbjct 8253 TCCGGGGTGCAAATCCCG 8270 >seq3035 Length=1767 Score = 239 bits (264), Expect = 2e-58 Identities = 147/157 (94%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 3612 AAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCC 3671 ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| Sbjct 217 AAATTGCCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGAACTGCCC 276 Query 3672 GCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAG 3731 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 277 GTTGACGGACTTCGGGGGAAAAACGTGTATTTTTAGTCATTCTGTTTACCTCTTTCTCAG 336 Query 3732 GGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAGAA 3768 || ||||||||||||||||||||||||||||||| || Sbjct 337 GGCGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAAAA 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203285702803480