Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq223 98.7 6e-16
>seq223
Length=82600
Score = 98.7 bits (108), Expect = 6e-16
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|||||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| |||
Sbjct 43060 CCGCCTCTCAGCCGCAAAACTAAATGGAGCGTGCTCTCCTTCTGAATGTTGTAATCGGAA 43119
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568
|| ||||| | ||||| |||||||| ||
Sbjct 43120 AGAGTTCGACCATCTTCCAGTTGTTTGCC 43148
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624
|||| ||||| |||||||| ||||| || || || | || ||||| || ||| |||
Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCC-TGAATTTTG 42124
Query 34625 GTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683
| ||| ||| | ||| ||||| ||||||||||| ||||| ||||| ||||||
Sbjct 42125 GCTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTT 42184
Query 34684 AACGTTTTCACAAAAATCTGCAT 34706
|| |||||||||||||| |||||
Sbjct 42185 AAAGTTTTCACAAAAATTTGCAT 42207
Score = 93.3 bits (102), Expect = 3e-14
Identities = 109/145 (75%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||||||||| |||| ||||| || || || || | ||| ||||| ||| ||| |||
Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCT-TGAATTTT 43255
Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
|| || ||| || ||| || || ||| ||||||| || || ||||| |||||
Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315
Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707
|| |||||||||||| |||||||||
Sbjct 43316 TAGCGTTTTCACAAATATCTGCATG 43340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314713658552348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |