Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq223 98.7 6e-16 >seq223 Length=82600 Score = 98.7 bits (108), Expect = 6e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||| Sbjct 43060 CCGCCTCTCAGCCGCAAAACTAAATGGAGCGTGCTCTCCTTCTGAATGTTGTAATCGGAA 43119 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACC 34568 || ||||| | ||||| |||||||| || Sbjct 43120 AGAGTTCGACCATCTTCCAGTTGTTTGCC 43148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| |||||||| ||||| || || || | || ||||| || ||| ||| Sbjct 42066 TACCAGCAAAAATTAAACGTTGTTGATCAGGTGGAATACCTTCCTTATCC-TGAATTTTG 42124 Query 34625 GTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 | ||| ||| | ||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 42125 GCTTTCACGTTTTCAATAGTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTT 42184 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 || |||||||||||||| ||||| Sbjct 42185 AAAGTTTTCACAAAAATTTGCAT 42207 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||||||||| |||| ||||| || || || || | ||| ||||| ||| ||| ||| Sbjct 43197 TTACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTATCT-TGAATTTT 43255 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| || ||| || || ||| ||||||| || || ||||| ||||| Sbjct 43256 CGTCTTCACGTTATCAATGGTATCGGACGGCTCAACTTCCAGCGTAATAGTTTTGCCGGT 43315 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 || |||||||||||| ||||||||| Sbjct 43316 TAGCGTTTTCACAAATATCTGCATG 43340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314713658552348