Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq223 114 1e-20
>seq223
Length=82600
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044
|| |||||||| || || ||||| || || || || | ||||| |||||||| || |||
Sbjct 43919 GCAATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCG 43860
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
|| ||||| ||||| | || || | ||||||||||| || |||||||| || || |||
Sbjct 43859 TCTGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGAT 43800
Query 27105 CAACAGCGTTTAATATACGCCGG 27127
||||||||| |||| | ||| ||
Sbjct 43799 CAACAGCGTCTAATCTTCGCAGG 43777
Score = 113 bits (124), Expect = 4e-20
Identities = 104/132 (79%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| ||||| || ||||| || || || || | || || || |||||||| |||||
Sbjct 42492 CATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTC 42433
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || ||| |||||| ||||||||||||||||| ||||| |||||
Sbjct 42432 AGACACCATTGAAAACGTTAAAACAAAAATACAAGACAAAGAAGGCATTCCACCTGATCA 42373
Query 27107 ACAGCGTTTAAT 27118
||||| |||||
Sbjct 42372 GCAGCGATTAAT 42361
Score = 111 bits (122), Expect = 1e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || |||||||| || |||||| | ||||| || ||||||||||| ||
Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || ||||| |||||||||||||| || || || ||||||
Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654
Query 27108 CAGCGTTTAAT 27118
||||| ||||
Sbjct 42653 CAGCGACTAAT 42643
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||||||||| ||||| || |||||||| ||||||| || ||||| || |||||
Sbjct 43340 CATGCAGATATTTGTGAAAACGCTAACCGGCAAAACTATTACGCTGGAAGTTGAGCCGTC 43281
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || || ||||||||||| || ||||| || || || |||||
Sbjct 43280 CGATACCATTGATAACGTGAAGACGAAAATTCAAGATAAGGAAGGAATCCCTCCAGATCA 43221
Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130
||||| |||| | ||||| ||
Sbjct 43220 GCAGCGACTAATCTTTGCCGGTAA 43197
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| |||||| |||| ||||||||||| || |||||
Sbjct 43058 ATGCAAATTTTCGTCAAGACATTGACGGGCAAGACTATCACTCTTGAAGTAGAGCCGTCA 42999
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || || || ||||||||||||||||| || ||||| || ||
Sbjct 42998 GACACCATTGAGAATGTTAAGACTAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAG 42939
Query 27108 CAGCGTTTAATATACGCCGGCAAA 27131
|||||| | || | ||| || |||
Sbjct 42938 CAGCGTCTTATCTTCGCAGGTAAA 42915
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| ||||| || ||| | |||||||| | || || | |||||||||||
Sbjct 43639 CGGCATGCAGATTTTTGTCAAGACTTTAACCGGCAAAACAATAACATTAGAAGTGGAACC 43580
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
|| ||| || |||||| || || ||||||||| ||||| |||||||| || || ||
Sbjct 43579 TTCGGACACGGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCGGA 43520
Query 27104 TCAACAGCGTTTAATATACGCCGG 27127
||| || || || || | ||||||
Sbjct 43519 TCAGCAACGGTTGATCTTCGCCGG 43496
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||||||||| || ||||| ||||| || ||| |||||||| | |||||||| || ||
Sbjct 41637 ATGCAGATATTCGTGAAAACGCTGACAGGGAAGACTATTACTTTGGAAGTGGAGCCTTCG 41578
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| || || ||||||||||| || || ||||| |||||
Sbjct 41577 GATACCATAGAAAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAG 41518
Query 27108 CAGCGTTTAATATACGCCGGCAAAC 27132
||||| ||||| | || || ||||
Sbjct 41517 CAGCGATTAATTTTTGCAGGTAAAC 41493
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| |||||||| || ||||| | || || || ||||| || |||||
Sbjct 41925 ATGCAAATCTTTGTGAAAACTCTAACTGGCAAAACAATCACCCTGGAAGTCGAGCCGTCG 41866
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| |||| |||| || || ||||||||||| || || || ||||||||||| |||
Sbjct 41865 GATACGATCGAGAACGTAAAGACGAAAATTCAAGATAAGGAGGGGATACCACCCGACCAA 41806
Query 27108 CAGCGTTTAATATACGCCGGCAAAC 27132
||||| | || | |||||| ||||
Sbjct 41805 CAGCGCCTGATTTTCGCCGGTAAAC 41781
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| |||||||| ||||| |||| ||||| |||| ||||| |||||||| || ||
Sbjct 41355 ATGCAAATATTTGTCAAAACATTGACAGGCAAAACTATAACTCTCGAAGTGGAGCCTTCG 41296
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || ||||||||||| || || || |||||
Sbjct 41295 GACACTATCGATAACGTGAAGGCCAAGATACAGGACAAAGAAGGAATTCCTCCTGATCAG 41236
Query 27108 CAGCGTTTAATATACGCCGG 27127
|||||| | || | |||||
Sbjct 41235 CAGCGTCTGATTTTTGCCGG 41216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434895805989120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |