Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq1627 2147 0.0 seq1947 859 0.0 seq1066 302 2e-77 seq3035 237 7e-58 >seq1627 Length=6655 Score = 2147 bits (2380), Expect = 0.0 Identities = 1262/1310 (96%), Gaps = 0/1310 (0%) Strand=Plus/Minus Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 1315 Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 1255 Query 33024 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 33083 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1254 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCCACTTC 1195 Query 33084 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 33143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 1135 Query 33144 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 33203 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1134 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 1075 Query 33204 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 33263 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 1074 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 1015 Query 33264 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 33323 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1014 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 955 Query 33324 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 33383 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 895 Query 33384 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 33443 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 835 Query 33444 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 33503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 775 Query 33504 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 33563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 715 Query 33564 CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCA 33623 ||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 714 CATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCA 655 Query 33624 GACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 33683 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| Sbjct 654 GACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTT 595 Query 33684 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 33743 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 CAGCCAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 535 Query 33744 ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTA 33803 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 534 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 475 Query 33804 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 33863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 415 Query 33864 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 33923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 355 Query 33924 TCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCC 33983 ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 354 TCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCC 295 Query 33984 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 34043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 235 Query 34044 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 34103 ||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 234 TTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGA 175 Query 34104 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 34163 |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 174 ACCATACGGACTGCCCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 115 Query 34164 TTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213 ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 114 TTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 65 >seq1947 Length=4488 Score = 859 bits (952), Expect = 0.0 Identities = 503/521 (97%), Gaps = 0/521 (0%) Strand=Plus/Minus Query 33699 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATGGTAATACGT 33758 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4488 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGT 4429 Query 33759 TGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTT 33818 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 4428 TGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTT 4369 Query 33819 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 33878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4368 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 4309 Query 33879 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCT 33938 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4308 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGCTCCAGCTCT 4249 Query 33939 TTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCA 33998 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 4248 TTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCCCCGGTATCCCGCTCA 4189 Query 33999 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAA 34058 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4188 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGAGCAATGGAA 4129 Query 34059 CAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCC 34118 ||||||| |||||| |||||||||||||| |||||||||||||||||||||| | ||| Sbjct 4128 CAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGGACTGCC 4069 Query 34119 CGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 34178 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4068 CGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 4009 Query 34179 GGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCATGATGA 34219 || |||||||||||||||||| ||||||||||||| | ||| Sbjct 4008 GGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAGGGTGA 3968 >seq1066 Length=13853 Score = 302 bits (334), Expect = 2e-77 Identities = 254/313 (81%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 27032 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 27091 ||||||||||| ||| |||||||||||||||||||||| || ||||||||| |||||||| Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351 Query 27092 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 27151 ||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| | Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291 Query 27152 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 27211 ||| || ||| |||||| || || |||||||||||||||||||||||||||||| Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231 Query 27212 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 27271 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179 Query 27272 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 27331 || ||||||||| ||| ||||| || ||||| ||| || | | ||| |||||||||||| Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119 Query 27332 CGATGGCGGTCCA 27344 || ||| || ||| Sbjct 118 CGGTGGTGGGCCA 106 Score = 179 bits (198), Expect = 2e-40 Identities = 203/264 (77%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 17313 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTAATA--ACCACCGCAGG 17370 |||||||| |||||||||||||||||||||||||| ||||| |||| ||||| | || Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGA--AATACTTCCACCACCGG 8088 Query 17371 AGGTGAGAAGCTCGCTGGCGGTGGACTGTACAGGGTTCTCACAACTGGCAATCAAGGGAA 17430 ||||| || |||||||| || |||||| |||||||| ||| || ||| ||||||| || Sbjct 8089 AGGTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAA 8148 Query 17431 CCAGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATG 17487 || | ||| | ||||| ||| | ||||||||||| | | ||||||| | Sbjct 8149 CCGG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCG 8205 Query 17488 TCGATACaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTGAGAA 17546 | || |||||||||||||||||||| | |||||||| ||| ||||||| || Sbjct 8206 TGGACGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAA 8265 Query 17547 TCCCGACACCCGTTTTATAAGGTG 17570 ||||| |||||||||||||||||| Sbjct 8266 TCCCGGCACCCGTTTTATAAGGTG 8289 Score = 123 bits (136), Expect = 1e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 26301 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 26360 |||||||||||||| | ||||||||| | ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 26361 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 26420 ||||||||| |||||| | |||| || || ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 26421 AAATCACGCCCGCAGTGCTGTGACGATGATG 26451 ||||| |||||||| || | || || |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906 Score = 84.2 bits (92), Expect = 9e-12 Identities = 145/198 (73%), Gaps = 17/198 (9%) Strand=Plus/Plus Query 5407 CACCACCGTTAGGTTCGAATCATCG--GGTGGTGAGAC-GTACAGGGTTCGAACTACCGG 5463 |||||||| |||| | |||| ||| ||||| | ||| | |||||||| | |||||||| Sbjct 8080 CACCACCGG-AGGTGCAAATC-TCGCTGGTGGCG-GACTGAACAGGGTTTGCACTACCGG 8136 Query 5464 GAAACCA----ACCGGCGAGCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAGATGT 5519 | | | |||||||||| |||| |||||||| | ||||||||||||| | || Sbjct 8137 CGATCAAGGAAACCGGCGAGCCTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGT 8196 Query 5520 GCGCGTGCATACGACAATAAAAAACACGCTCGCGGCGTGTC-TCTGTCGCGGT-TTCTA- 5576 ||| | || | ||| |||||||| ||||| |||| ||| | | |||| | || | Sbjct 8197 GCGTGAGCGT-GGACGATAAAAAAGACGCT---GGCGCGTCGTATATCGCCTTGATCAAT 8252 Query 5577 TCCGGGGTTCGAATCCCG 5594 |||||||| | ||||||| Sbjct 8253 TCCGGGGTGCAAATCCCG 8270 >seq3035 Length=1767 Score = 237 bits (262), Expect = 7e-58 Identities = 145/154 (94%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34060 AAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCC 34119 ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| Sbjct 217 AAATTGCCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGAACTGCCC 276 Query 34120 GCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAG 34179 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 277 GTTGACGGACTTCGGGGGAAAAACGTGTATTTTTAGTCATTCTGTTTACCTCTTTCTCAG 336 Query 34180 GGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213 || ||||||||||||||||||||||||||||||| Sbjct 337 GGCGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210920516071056