Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq1627 2147 0.0
seq1947 859 0.0
seq1066 302 2e-77
seq3035 237 7e-58
>seq1627
Length=6655
Score = 2147 bits (2380), Expect = 0.0
Identities = 1262/1310 (96%), Gaps = 0/1310 (0%)
Strand=Plus/Minus
Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 1315
Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 1255
Query 33024 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 33083
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1254 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCCACTTC 1195
Query 33084 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 33143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 1135
Query 33144 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 33203
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1134 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 1075
Query 33204 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 33263
||| || || |||| || |||||||| || ||||||||||| |||||||| ||||||||
Sbjct 1074 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 1015
Query 33264 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 33323
|| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1014 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 955
Query 33324 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 33383
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 895
Query 33384 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 33443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 835
Query 33444 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 33503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 775
Query 33504 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 33563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCGC 715
Query 33564 CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCCA 33623
||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 714 CATGAGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCA 655
Query 33624 GACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCTCTCTCTT 33683
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||
Sbjct 654 GACTTTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTCTTTCTT 595
Query 33684 CAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 33743
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CAGCCAGTCATCGCGCTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTG 535
Query 33744 ACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTA 33803
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 534 ACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTA 475
Query 33804 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 33863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCC 415
Query 33864 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 33923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTT 355
Query 33924 TCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCC 33983
||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 354 TCACGCTCCAGCTCTTTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCC 295
Query 33984 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 34043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATC 235
Query 34044 TTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGA 34103
||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 234 TTTGGAGCAATGGAACAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGA 175
Query 34104 ACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 34163
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ACCATACGGACTGCCCGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTG 115
Query 34164 TTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213
||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 114 TTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 65
>seq1947
Length=4488
Score = 859 bits (952), Expect = 0.0
Identities = 503/521 (97%), Gaps = 0/521 (0%)
Strand=Plus/Minus
Query 33699 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATGGTAATACGT 33758
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 4488 CTGCGCACGGGCACTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGT 4429
Query 33759 TGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTT 33818
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4428 TGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGCAGCTT 4369
Query 33819 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 33878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4368 ATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCG 4309
Query 33879 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCT 33938
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4308 GAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGCTCCAGCTCT 4249
Query 33939 TTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCA 33998
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 4248 TTCAGACGCTGACGTTCAGCGGTGGTGAGCCCTCCATCACCGCCCCCGGTATCCCGCTCA 4189
Query 33999 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAA 34058
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4188 TGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGAGCAATGGAA 4129
Query 34059 CAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCC 34118
||||||| |||||| |||||||||||||| |||||||||||||||||||||| | |||
Sbjct 4128 CAAATTGTCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGGACTGCC 4069
Query 34119 CGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 34178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4068 CGTTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCA 4009
Query 34179 GGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCATGATGA 34219
|| |||||||||||||||||| ||||||||||||| | |||
Sbjct 4008 GGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAGGGTGA 3968
>seq1066
Length=13853
Score = 302 bits (334), Expect = 2e-77
Identities = 254/313 (81%), Gaps = 8/313 (3%)
Strand=Plus/Minus
Query 27032 GTCAAAGCAGCAATGTCGCTGGGGCGTCGTGCAATTGGCGTTGAGCTGGAGACTGAACGT 27091
||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 410 GTCAAAGCAGCGATGGCGCTGGGGCGTCGTGCAATTGGTGTCGAGCTGGAGGCTGAACGT 351
Query 27092 TTTGAGCAGACGGTCAGGGAAGTTCAGGATTTAGTCAGTCAGAACGGATGATATTGCAGG 27151
||||||||||| | || || || ||| ||| | |||| ||| | ||||||||| |
Sbjct 350 TTTGAGCAGACCGCAAGAGATGTACAGAATTCAATCAGAAAGAGAGAGTGATATTGCTGA 291
Query 27152 ATTAGTTACGTACCGTTATTATCCTGCGCCCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 27211
||| || ||| |||||| || || ||||||||||||||||||||||||||||||
Sbjct 290 ATTTATTCTGTAACGTTATCATTATGTTATCGGCCCTTTAGCTCAGTGGTGAGAGCGAGC 231
Query 27212 GACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATATCACATACCGC 27271
||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 230 GACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA--------ACCAC 179
Query 27272 CATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCT 27331
|| ||||||||| ||| ||||| || ||||| ||| || | | ||| ||||||||||||
Sbjct 178 CACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCT 119
Query 27332 CGATGGCGGTCCA 27344
|| ||| || |||
Sbjct 118 CGGTGGTGGGCCA 106
Score = 179 bits (198), Expect = 2e-40
Identities = 203/264 (77%), Gaps = 11/264 (4%)
Strand=Plus/Plus
Query 17313 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTAATA--ACCACCGCAGG 17370
|||||||| |||||||||||||||||||||||||| ||||| |||| ||||| | ||
Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGA--AATACTTCCACCACCGG 8088
Query 17371 AGGTGAGAAGCTCGCTGGCGGTGGACTGTACAGGGTTCTCACAACTGGCAATCAAGGGAA 17430
||||| || |||||||| || |||||| |||||||| ||| || ||| ||||||| ||
Sbjct 8089 AGGTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAA 8148
Query 17431 CCAGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATG 17487
|| | ||| | ||||| ||| | ||||||||||| | | ||||||| |
Sbjct 8149 CCGG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCG 8205
Query 17488 TCGATACaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTGAGAA 17546
| || |||||||||||||||||||| | |||||||| ||| ||||||| ||
Sbjct 8206 TGGACGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAA 8265
Query 17547 TCCCGACACCCGTTTTATAAGGTG 17570
||||| ||||||||||||||||||
Sbjct 8266 TCCCGGCACCCGTTTTATAAGGTG 8289
Score = 123 bits (136), Expect = 1e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 26301 CTGATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCAT 26360
|||||||||||||| | ||||||||| | ||||||||||||| ||||||||| ||
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 26361 GAGGATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTA 26420
||||||||| |||||| | |||| || || ||||||||| | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 26421 AAATCACGCCCGCAGTGCTGTGACGATGATG 26451
||||| |||||||| || | || || ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATG 2906
Score = 84.2 bits (92), Expect = 9e-12
Identities = 145/198 (73%), Gaps = 17/198 (9%)
Strand=Plus/Plus
Query 5407 CACCACCGTTAGGTTCGAATCATCG--GGTGGTGAGAC-GTACAGGGTTCGAACTACCGG 5463
|||||||| |||| | |||| ||| ||||| | ||| | |||||||| | ||||||||
Sbjct 8080 CACCACCGG-AGGTGCAAATC-TCGCTGGTGGCG-GACTGAACAGGGTTTGCACTACCGG 8136
Query 5464 GAAACCA----ACCGGCGAGCTTTTCAGCTCCCCTATACGCCCCACCATAATTCAGATGT 5519
| | | |||||||||| |||| |||||||| | ||||||||||||| | ||
Sbjct 8137 CGATCAAGGAAACCGGCGAGCCTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGT 8196
Query 5520 GCGCGTGCATACGACAATAAAAAACACGCTCGCGGCGTGTC-TCTGTCGCGGT-TTCTA- 5576
||| | || | ||| |||||||| ||||| |||| ||| | | |||| | || |
Sbjct 8197 GCGTGAGCGT-GGACGATAAAAAAGACGCT---GGCGCGTCGTATATCGCCTTGATCAAT 8252
Query 5577 TCCGGGGTTCGAATCCCG 5594
|||||||| | |||||||
Sbjct 8253 TCCGGGGTGCAAATCCCG 8270
>seq3035
Length=1767
Score = 237 bits (262), Expect = 7e-58
Identities = 145/154 (94%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 34060 AAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCC 34119
||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 217 AAATTGCCGCCCATTGTGAGTCATATTCGCCCTGACTTTCCAGAACCATACGAACTGCCC 276
Query 34120 GCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAG 34179
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 277 GTTGACGGACTTCGGGGGAAAAACGTGTATTTTTAGTCATTCTGTTTACCTCTTTCTCAG 336
Query 34180 GGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213
|| |||||||||||||||||||||||||||||||
Sbjct 337 GGCGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 210920516071056
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