Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028660.1
Length=61035
Score E
Sequences producing significant alignments: (Bits) Value
seq974 324 5e-84
seq1066 316 8e-82
>seq974
Length=15858
Score = 324 bits (358), Expect = 5e-84
Identities = 561/810 (69%), Gaps = 4/810 (0%)
Strand=Plus/Plus
Query 32968 TGCTGTTTATCAGGAAAGATTTACTGACCGGGGAAAAGGGAAGCAGGAAAACCAGCACGT 33027
|||||| ||||||||||||||| ||||||||| | || | ||||| || |
Sbjct 2 TGCTGTATATCAGGAAAGATTTGCTGACCGGGTATCAGAATTCAACGAAAAACAAAGCAG 61
Query 33028 CCCGAAAAGGAAGAACCGTACCCACAGTGAACTATTACATGACAACAACAGCCGGAATGT 33087
| ||||||| | | ||| || || || ||||||||||| |||| || |||||||
Sbjct 62 CAGCAAAAGGACGGAGCGTCGTTACTGTAAATTATTACATGACGACAATCGCTGGAATGT 121
Query 33088 T-CAGCTTTGCCGCCGAAAACGGGTATCTGGAGAAAAACCCGTTTAATTCAATAACACCG 33146
| ||| ||||| || || |||| || | || ||| || || | ||| | ||
Sbjct 122 TTCAG-TTTGCTGCAGATCACGGTTACTTAGAAGCAAATCCCTTCCAGGGAATTAAGCCT 180
Query 33147 CTGAGGAAATCAAAACCAGTGCCGGATCCACTGACCAGAGATGAGTTTAGCCGTCTCATT 33206
|| | | | | | ||| ||| ||||| || || | || || |||| || || ||
Sbjct 181 CTTAAAAGAGCCAGGGCAGAGCCAGATCCGCTAACTCGTGACGAATTTATTCGCCTGATA 240
Query 33207 GATGCCTGCCATCATCAACAGACCAAAAACCTCTGGACAGTGGCTGTTTTTACAGGGATG 33266
||||| |||| ||||| ||||| |||||||| ||| || ||||||| | ||||| |||
Sbjct 241 GATGCTTGCCGACATCAGCAGACGAAAAACCTGTGGTCATTGGCTGTGTACACAGGAATG 300
Query 33267 CGACACGGTGAAATTGCCGCACTTGCATGGGAGGATATCGACCTGAAAGCTGGCACGATA 33326
|| ||||||||| | | | | || || ||||| |||||||| |||||||| || || ||
Sbjct 301 CGTCACGGTGAACTGGTCTCCCTGGCCTGGGAAGATATCGATCTGAAAGCAGGAACTATT 360
Query 33327 ACAGTGCGACGAAATTTTACAAAAATAGGTGATTTTACGCTACCAAAGACCGACGCAGGC 33386
|| | | || |||| ||| ||| | ||||| || || ||||| || || || ||| |
Sbjct 361 ACTATCAGGCGCAATTATACGAAACTCGGTGAGTTCACTCTACCTAAAACTGAAGCAAGT 420
Query 33387 ACTAACCGGGTTATACATCTTCTGGCACCAGCAATTGAAGCACTTAAAAACCAGGCGATG 33446
|| ||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 421 ACAAACAGGGTTGTGCATCTTATCCAGCCCGCTATCAGTGTCCTGAAAAATCAGGCTGAA 480
Query 33447 CTTACTCGTCTTAGCAGGCAGCATCAGATCACTGTTCAATTACGCGAGTACGGAAGAACA 33506
| || | || | | |||||| || |||| |||||| |||| || || ||| | ||
Sbjct 481 ATGACAAGACTGGGTAAGCAGCACCACATCAAGGTTCAACTACGTGAATATGGACGTTCA 540
Query 33507 ATTTTGCACGAGTGCACTTTTGTTTTCTGTCCGCAAATCGTTCGCAAGAATCACA-AGGC 33565
| || || || ||||| || || || || | ||| | || || || | |||
Sbjct 541 GTGAATCATGAATGTACTTTCGTATTTAACCCCCAGGTGGTTAGAAA-AAGCAAACAGGT 599
Query 33566 TGGTATTAACTACGCGGTAAGCTCCATCGGAGCGACATGGGATTCAGCAATAAAAAGAGC 33625
||| ||| |||| |||| ||||| || | ||||||| |||| || || | ||
Sbjct 600 AGGTTTTATCTACAAGGTAGATTCCATTGGCGACTCATGGGAAACAGCCATTAAGCGTGC 659
Query 33626 GGGTATCCGATCCCGTAAAGCGTATCAGTCACGCCATACCTATGCGTGCTGGGCTTTATC 33685
||| ||| | ||| ||||| || |||||||| || || |||||||||||| | |||||
Sbjct 660 GGGCATCAGGCACCGGAAAGCATACCAGTCACGACACACTTATGCGTGCTGGTCATTATC 719
Query 33686 TGCCGGAGCAAACCCGACATTTATTGCATCACAGATGGGGCACTCCAGCGCCAGCATGGT 33745
||||||||||||||| | || ||||| ||||||||||| | || ||| |||||
Sbjct 720 TGCCGGAGCAAACCCAAGCTTCATTGCCAGCCAGATGGGGCATGCAAGTGCCCAGATGGT 779
Query 33746 CTACAATGTTTATGGTGCATGGATGCCTGA 33775
| |||||| || || ||||||||| ||||
Sbjct 780 GTTCAATGTATACGGAGCATGGATGACTGA 809
>seq1066
Length=13853
Score = 316 bits (350), Expect = 8e-82
Identities = 315/407 (77%), Gaps = 21/407 (5%)
Strand=Plus/Plus
Query 10033 ATATGGCGCGTTGTACTGGATTCGAACCAGTGACCGATTGCTCAGAAGGCAATTGCTCTG 10092
|||||| || ||| ||| |||||| |||||| | || | | ||| || ||||||||
Sbjct 25 ATATGGTGCCGACTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTG 84
Query 10093 TCCGGCTGAGCTAACAACGCATAATGCAGATAATGGACCGCCATCCGAGGACTCGAACCC 10152
|| |||||||||| || || ||| || ||| |||||||||||||||
Sbjct 85 -CCTGCTGAGCTAAGTCGGC-----GC------TGGCCCACCA-CCGAGGACTCGAACCT 131
Query 10153 CGCGCAGCCAGCTTCGAAGGCTGGCGCTCTGTCCCGATGAGCTAATGGCGGTATGTGATA 10212
||| | | || ||| ||||| || ||||| ||| ||||||||| ||| |||
Sbjct 132 CGCACCGTCAACTTAGAAGGTTGATGCTCTATCCGGATGAGCTAGTGGTGGT-------- 183
Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TGGTGGCCCTTGCTGGACTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 243
Query 10273 ACTGAGCTAAAGGGCCGGGCGCAGGATAATAACGGTACGTAACTAATCCTGCAATATCAT 10332
||||||||||||||||| || || |||||| ||| || ||| | |||||||||
Sbjct 244 ACTGAGCTAAAGGGCCGATAACATAATGATAACGTTACAGAATAAATTCAGCAATATCAC 303
Query 10333 CCGTTCTGACTGACTAAATCCTGAACTTCCCTGACCGTCTGCTCAAAACGTTCAGTCTCC 10392
| ||| |||| | ||| ||| || || || | ||||||||||||||||||| ||||
Sbjct 304 TCTCTCTTTCTGATTGAATTCTGTACATCTCTTGCGGTCTGCTCAAAACGTTCAGCCTCC 363
Query 10393 AGCTCAACGCCAATTGCACGACGCCCCAGCGACATTGCTGCTTTGAC 10439
||||| || |||||||||||||||||||||| ||| |||||||||||
Sbjct 364 AGCTCGACACCAATTGCACGACGCCCCAGCGCCATCGCTGCTTTGAC 410
Score = 159 bits (176), Expect = 1e-34
Identities = 196/262 (75%), Gaps = 7/262 (3%)
Strand=Plus/Minus
Query 19805 CACCTCATAAAACGGGTGTCGGGATTGCTACCCCGCTGACAATCGAGGCGATACA-GACG 19863
||||| |||||||||||| ||||||| |||||| ||| |||||||| | ||||
Sbjct 8289 CACCTTATAAAACGGGTGCCGGGATTTGCACCCCGGAATTGATCAAGGCGATATACGACG 8230
Query 19864 CGCCAGCGTCtttttttGTATCGACATACACGCACATCTTATCAATGGTGGGCTGT--AT 19921
|||||||||||||||| || || ||||||| | | ||||||||||| |
Sbjct 8229 CGCCAGCGTCTTTTTTATCGTCCACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAG 8170
Query 19922 GGG-GCCGACTTCGGTCGGGCTGGTTCCCTTGATTGCCAGTTGTAGCAACCCTGTACAGT 19980
||| ||||| | ||| | |||| ||||||| ||| || || |||||||| ||||
Sbjct 8169 GGGAGCCGAAAG-GCTCG--CCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGT 8113
Query 19981 CCACCGCCAGCGAGCTTGCTACCTCCAGCGGTGGTTATCAATCACCAATCAAGGAGGCTG 20040
|| || |||||||| || |||||| | ||||| | ||||| |||||||||||||
Sbjct 8112 CCGCCACCAGCGAGATTTGCACCTCCGGTGGTGGAAGTATTTCACCGATCAAGGAGGCTG 8053
Query 20041 CCATTATGGCTACTATCCCAGT 20062
||||||||||||| ||||||||
Sbjct 8052 CCATTATGGCTACGATCCCAGT 8031
Score = 114 bits (126), Expect = 5e-21
Identities = 123/163 (75%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 11008 TAATCATCGCGTCATCGTCA---CAACACTGTGGACGTGATTTTACTTTTTCGGGGATCA 11064
|||| ||| | |||||||| | ||| || || || ||||||||||| ||||| |
Sbjct 2894 TAATGATCAGGCCATCGTCATCGCTACATTGCGGGCGGGATTTTACTTTCGAAGGGATTA 2953
Query 11065 GCCTCTTAAATCCGGCAGCAATGGGCGACCATGTAACATCCTCATGGTTATTTGCCGCCC 11124
| |||||| || ||||||| | |||||| |||||||| || ||||||||| |||
Sbjct 2954 ATCCCTTAAAACCTGCAGCAACAGATGACCATTCCACATCCTCGTGATTATTTGCCACCC 3013
Query 11125 ATGCCCCCCAGCGCTCAAGAACCTGCCGGATAWCACGCATCAG 11167
|||||||||| || ||||||||| | ||| ||||||||||
Sbjct 3014 ATGCCCCCCAACGTTCAAGAACCATTTGAATATCACGCATCAG 3056
Lambda K H
0.634 0.408 0.913
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195180766865784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |