Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq974 324 5e-84 seq1066 316 8e-82 >seq974 Length=15858 Score = 324 bits (358), Expect = 5e-84 Identities = 561/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Plus Query 32968 TGCTGTTTATCAGGAAAGATTTACTGACCGGGGAAAAGGGAAGCAGGAAAACCAGCACGT 33027 |||||| ||||||||||||||| ||||||||| | || | ||||| || | Sbjct 2 TGCTGTATATCAGGAAAGATTTGCTGACCGGGTATCAGAATTCAACGAAAAACAAAGCAG 61 Query 33028 CCCGAAAAGGAAGAACCGTACCCACAGTGAACTATTACATGACAACAACAGCCGGAATGT 33087 | ||||||| | | ||| || || || ||||||||||| |||| || ||||||| Sbjct 62 CAGCAAAAGGACGGAGCGTCGTTACTGTAAATTATTACATGACGACAATCGCTGGAATGT 121 Query 33088 T-CAGCTTTGCCGCCGAAAACGGGTATCTGGAGAAAAACCCGTTTAATTCAATAACACCG 33146 | ||| ||||| || || |||| || | || ||| || || | ||| | || Sbjct 122 TTCAG-TTTGCTGCAGATCACGGTTACTTAGAAGCAAATCCCTTCCAGGGAATTAAGCCT 180 Query 33147 CTGAGGAAATCAAAACCAGTGCCGGATCCACTGACCAGAGATGAGTTTAGCCGTCTCATT 33206 || | | | | | ||| ||| ||||| || || | || || |||| || || || Sbjct 181 CTTAAAAGAGCCAGGGCAGAGCCAGATCCGCTAACTCGTGACGAATTTATTCGCCTGATA 240 Query 33207 GATGCCTGCCATCATCAACAGACCAAAAACCTCTGGACAGTGGCTGTTTTTACAGGGATG 33266 ||||| |||| ||||| ||||| |||||||| ||| || ||||||| | ||||| ||| Sbjct 241 GATGCTTGCCGACATCAGCAGACGAAAAACCTGTGGTCATTGGCTGTGTACACAGGAATG 300 Query 33267 CGACACGGTGAAATTGCCGCACTTGCATGGGAGGATATCGACCTGAAAGCTGGCACGATA 33326 || ||||||||| | | | | || || ||||| |||||||| |||||||| || || || Sbjct 301 CGTCACGGTGAACTGGTCTCCCTGGCCTGGGAAGATATCGATCTGAAAGCAGGAACTATT 360 Query 33327 ACAGTGCGACGAAATTTTACAAAAATAGGTGATTTTACGCTACCAAAGACCGACGCAGGC 33386 || | | || |||| ||| ||| | ||||| || || ||||| || || || ||| | Sbjct 361 ACTATCAGGCGCAATTATACGAAACTCGGTGAGTTCACTCTACCTAAAACTGAAGCAAGT 420 Query 33387 ACTAACCGGGTTATACATCTTCTGGCACCAGCAATTGAAGCACTTAAAAACCAGGCGATG 33446 || ||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 421 ACAAACAGGGTTGTGCATCTTATCCAGCCCGCTATCAGTGTCCTGAAAAATCAGGCTGAA 480 Query 33447 CTTACTCGTCTTAGCAGGCAGCATCAGATCACTGTTCAATTACGCGAGTACGGAAGAACA 33506 | || | || | | |||||| || |||| |||||| |||| || || ||| | || Sbjct 481 ATGACAAGACTGGGTAAGCAGCACCACATCAAGGTTCAACTACGTGAATATGGACGTTCA 540 Query 33507 ATTTTGCACGAGTGCACTTTTGTTTTCTGTCCGCAAATCGTTCGCAAGAATCACA-AGGC 33565 | || || || ||||| || || || || | ||| | || || || | ||| Sbjct 541 GTGAATCATGAATGTACTTTCGTATTTAACCCCCAGGTGGTTAGAAA-AAGCAAACAGGT 599 Query 33566 TGGTATTAACTACGCGGTAAGCTCCATCGGAGCGACATGGGATTCAGCAATAAAAAGAGC 33625 ||| ||| |||| |||| ||||| || | ||||||| |||| || || | || Sbjct 600 AGGTTTTATCTACAAGGTAGATTCCATTGGCGACTCATGGGAAACAGCCATTAAGCGTGC 659 Query 33626 GGGTATCCGATCCCGTAAAGCGTATCAGTCACGCCATACCTATGCGTGCTGGGCTTTATC 33685 ||| ||| | ||| ||||| || |||||||| || || |||||||||||| | ||||| Sbjct 660 GGGCATCAGGCACCGGAAAGCATACCAGTCACGACACACTTATGCGTGCTGGTCATTATC 719 Query 33686 TGCCGGAGCAAACCCGACATTTATTGCATCACAGATGGGGCACTCCAGCGCCAGCATGGT 33745 ||||||||||||||| | || ||||| ||||||||||| | || ||| ||||| Sbjct 720 TGCCGGAGCAAACCCAAGCTTCATTGCCAGCCAGATGGGGCATGCAAGTGCCCAGATGGT 779 Query 33746 CTACAATGTTTATGGTGCATGGATGCCTGA 33775 | |||||| || || ||||||||| |||| Sbjct 780 GTTCAATGTATACGGAGCATGGATGACTGA 809 >seq1066 Length=13853 Score = 316 bits (350), Expect = 8e-82 Identities = 315/407 (77%), Gaps = 21/407 (5%) Strand=Plus/Plus Query 10033 ATATGGCGCGTTGTACTGGATTCGAACCAGTGACCGATTGCTCAGAAGGCAATTGCTCTG 10092 |||||| || ||| ||| |||||| |||||| | || | | ||| || |||||||| Sbjct 25 ATATGGTGCCGACTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTG 84 Query 10093 TCCGGCTGAGCTAACAACGCATAATGCAGATAATGGACCGCCATCCGAGGACTCGAACCC 10152 || |||||||||| || || ||| || ||| ||||||||||||||| Sbjct 85 -CCTGCTGAGCTAAGTCGGC-----GC------TGGCCCACCA-CCGAGGACTCGAACCT 131 Query 10153 CGCGCAGCCAGCTTCGAAGGCTGGCGCTCTGTCCCGATGAGCTAATGGCGGTATGTGATA 10212 ||| | | || ||| ||||| || ||||| ||| ||||||||| ||| ||| Sbjct 132 CGCACCGTCAACTTAGAAGGTTGATGCTCTATCCGGATGAGCTAGTGGTGGT-------- 183 Query 10213 TGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 10272 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TGGTGGCCCTTGCTGGACTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACC 243 Query 10273 ACTGAGCTAAAGGGCCGGGCGCAGGATAATAACGGTACGTAACTAATCCTGCAATATCAT 10332 ||||||||||||||||| || || |||||| ||| || ||| | ||||||||| Sbjct 244 ACTGAGCTAAAGGGCCGATAACATAATGATAACGTTACAGAATAAATTCAGCAATATCAC 303 Query 10333 CCGTTCTGACTGACTAAATCCTGAACTTCCCTGACCGTCTGCTCAAAACGTTCAGTCTCC 10392 | ||| |||| | ||| ||| || || || | ||||||||||||||||||| |||| Sbjct 304 TCTCTCTTTCTGATTGAATTCTGTACATCTCTTGCGGTCTGCTCAAAACGTTCAGCCTCC 363 Query 10393 AGCTCAACGCCAATTGCACGACGCCCCAGCGACATTGCTGCTTTGAC 10439 ||||| || |||||||||||||||||||||| ||| ||||||||||| Sbjct 364 AGCTCGACACCAATTGCACGACGCCCCAGCGCCATCGCTGCTTTGAC 410 Score = 159 bits (176), Expect = 1e-34 Identities = 196/262 (75%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 19805 CACCTCATAAAACGGGTGTCGGGATTGCTACCCCGCTGACAATCGAGGCGATACA-GACG 19863 ||||| |||||||||||| ||||||| |||||| ||| |||||||| | |||| Sbjct 8289 CACCTTATAAAACGGGTGCCGGGATTTGCACCCCGGAATTGATCAAGGCGATATACGACG 8230 Query 19864 CGCCAGCGTCtttttttGTATCGACATACACGCACATCTTATCAATGGTGGGCTGT--AT 19921 |||||||||||||||| || || ||||||| | | ||||||||||| | Sbjct 8229 CGCCAGCGTCTTTTTTATCGTCCACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAG 8170 Query 19922 GGG-GCCGACTTCGGTCGGGCTGGTTCCCTTGATTGCCAGTTGTAGCAACCCTGTACAGT 19980 ||| ||||| | ||| | |||| ||||||| ||| || || |||||||| |||| Sbjct 8169 GGGAGCCGAAAG-GCTCG--CCGGTTTCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGT 8113 Query 19981 CCACCGCCAGCGAGCTTGCTACCTCCAGCGGTGGTTATCAATCACCAATCAAGGAGGCTG 20040 || || |||||||| || |||||| | ||||| | ||||| ||||||||||||| Sbjct 8112 CCGCCACCAGCGAGATTTGCACCTCCGGTGGTGGAAGTATTTCACCGATCAAGGAGGCTG 8053 Query 20041 CCATTATGGCTACTATCCCAGT 20062 ||||||||||||| |||||||| Sbjct 8052 CCATTATGGCTACGATCCCAGT 8031 Score = 114 bits (126), Expect = 5e-21 Identities = 123/163 (75%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 11008 TAATCATCGCGTCATCGTCA---CAACACTGTGGACGTGATTTTACTTTTTCGGGGATCA 11064 |||| ||| | |||||||| | ||| || || || ||||||||||| ||||| | Sbjct 2894 TAATGATCAGGCCATCGTCATCGCTACATTGCGGGCGGGATTTTACTTTCGAAGGGATTA 2953 Query 11065 GCCTCTTAAATCCGGCAGCAATGGGCGACCATGTAACATCCTCATGGTTATTTGCCGCCC 11124 | |||||| || ||||||| | |||||| |||||||| || ||||||||| ||| Sbjct 2954 ATCCCTTAAAACCTGCAGCAACAGATGACCATTCCACATCCTCGTGATTATTTGCCACCC 3013 Query 11125 ATGCCCCCCAGCGCTCAAGAACCTGCCGGATAWCACGCATCAG 11167 |||||||||| || ||||||||| | ||| |||||||||| Sbjct 3014 ATGCCCCCCAACGTTCAAGAACCATTTGAATATCACGCATCAG 3056 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195180766865784