Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028672.1
Length=149732
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 82.4 7e-11
>seq1207
Length=11574
Score = 82.4 bits (90), Expect = 7e-11
Identities = 228/341 (67%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 16681 ACCGCCGTATGGGTCGATGTATTCCCCGGTCTCCAGATCCTTTGCGATCGCATTAATGGT 16740
|||| ||| |||||||| || ||| | || |||| || | ||||||||||||
Sbjct 3907 ACCGTTGTACGGGTCGATAATCTCGCCGTTATCG---TCCTGGGCCAGCGCATTAATGGT 3963
Query 16741 CAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG-GCTGAACATCACCTCGA 16799
|| || || || | ||| ||||| | || ||||| || || | | | || | |
Sbjct 3964 CAGATCGCGACGCTTAAGATCATCTTCCAGCGTGACATCCGGTGCGGCATAGCAAGTA-A 4022
Query 16800 AATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGGGCGTACTCTTCCTTGG 16859
|| || ||| || | || | | || |||||||| ||||| || |||||||| | |
Sbjct 4023 AACCGGTGTAACCGGAACCGGATTTCCGTTCGGTACGTGCCAGCGCATACTCTTCATGCG 4082
Query 16860 TCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCGAAGCC-GAGTGCCATC 16918
| | |||||||| | || || || || || || |||| | |||| | || | | |
Sbjct 4083 TTTGCGGATGCAGAAACACAGGAAAATCGCGGCCTACCTGCTGGTAGCCCGCGT-CGAGC 4141
Query 16919 ATCTCTTCGTGG-GTGGAGCCGACCACAACGTAGTCACGGTCTTTGCTCTCAACACCCAT 16977
||||| | |||| || ||||||||| || | || | ||||||| | | || |
Sbjct 4142 ATCTCCT-GTGGCGTACTGCCGACCACCACCCAATCTCTGTCTTTGACCGGTAGCCCTAA 4200
Query 16978 CAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCA 17018
|| | |||| || || || || ||||||||||| || ||||
Sbjct 4201 CAATGCATCCCGAACAGCACCACCGACCAGATAAATCTTCA 4241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478989515201920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |