Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq1207 82.4 7e-11 >seq1207 Length=11574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 228/341 (67%), Gaps = 9/341 (3%) Strand=Plus/Plus Query 16681 ACCGCCGTATGGGTCGATGTATTCCCCGGTCTCCAGATCCTTTGCGATCGCATTAATGGT 16740 |||| ||| |||||||| || ||| | || |||| || | |||||||||||| Sbjct 3907 ACCGTTGTACGGGTCGATAATCTCGCCGTTATCG---TCCTGGGCCAGCGCATTAATGGT 3963 Query 16741 CAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG-GCTGAACATCACCTCGA 16799 || || || || | ||| ||||| | || ||||| || || | | | || | | Sbjct 3964 CAGATCGCGACGCTTAAGATCATCTTCCAGCGTGACATCCGGTGCGGCATAGCAAGTA-A 4022 Query 16800 AATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGGGCGTACTCTTCCTTGG 16859 || || ||| || | || | | || |||||||| ||||| || |||||||| | | Sbjct 4023 AACCGGTGTAACCGGAACCGGATTTCCGTTCGGTACGTGCCAGCGCATACTCTTCATGCG 4082 Query 16860 TCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCGAAGCC-GAGTGCCATC 16918 | | |||||||| | || || || || || || |||| | |||| | || | | | Sbjct 4083 TTTGCGGATGCAGAAACACAGGAAAATCGCGGCCTACCTGCTGGTAGCCCGCGT-CGAGC 4141 Query 16919 ATCTCTTCGTGG-GTGGAGCCGACCACAACGTAGTCACGGTCTTTGCTCTCAACACCCAT 16977 ||||| | |||| || ||||||||| || | || | ||||||| | | || | Sbjct 4142 ATCTCCT-GTGGCGTACTGCCGACCACCACCCAATCTCTGTCTTTGACCGGTAGCCCTAA 4200 Query 16978 CAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCA 17018 || | |||| || || || || ||||||||||| || |||| Sbjct 4201 CAATGCATCCCGAACAGCACCACCGACCAGATAAATCTTCA 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478989515201920