Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq974 324 6e-84 seq1066 158 5e-34 >seq974 Length=15858 Score = 324 bits (358), Expect = 6e-84 Identities = 561/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 208 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 267 |||| ||||||||| || || |||||| | ||||| ||| || | ||||||||||| Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750 Query 268 GACGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 327 ||||| || | |||||||||||||||||||| | |||||||||||| || || ||| Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690 Query 328 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 387 ||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| | Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630 Query 388 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 446 || ||||| |||| |||| ||| ||| ||| | || || || | ||| | || || Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571 Query 447 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTTAACAGT 506 || || ||||| || || || | || | ||| || || |||| || ||| | Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511 Query 507 GATCTGATGCTGCCTGCCAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 566 ||| || |||||| | || || | || | ||||| ||||| || | || || Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451 Query 567 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCAGTCTTTGGTAGCGTAAAATC 626 || | |||||| | ||||| ||| || | ||| ||||| || ||||| || || || Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391 Query 627 ACCTATTTTTGTAAAATTTCTTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 686 ||| | ||| ||| |||| | | | || || || || |||||||| |||||||| || Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331 Query 687 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 746 ||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| || Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271 Query 747 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 806 |||||| ||||| ||||| |||| ||||| || || || |||| || || | || || Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211 Query 807 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 866 ||||| ||| ||| | | | | | || || | ||| | || || ||| || Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151 Query 867 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 925 | || |||| || || ||||| ||| |||||||| || |||| ||||||||||| | Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92 Query 926 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 985 | || || ||| | | ||||||| | | || ||||| | || | || Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32 Query 986 CGGTCAGTAAATCTTTCCTGATAAACAGCA 1015 ||||||| ||||||||||||||| |||||| Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2 >seq1066 Length=13853 Score = 158 bits (174), Expect = 5e-34 Identities = 197/263 (75%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 15699 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTGATAACCACCGCTGGAG 15758 |||||||| |||||||||||||||||||||||||| ||||| | ||||| | |||| Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGAAATACTTCCACCACCGGAG 8090 Query 15759 GTAGCAAGCTCGCTGGCGGTGGACTGTACAGGGTTGCTACAACTGGCAATCAAGGGAACC 15818 || || |||||||| || |||||| |||||||| || || ||| ||||||| |||| Sbjct 8091 GTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACC 8150 Query 15819 AGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATGTC 15875 | ||| | ||||| ||| | ||||||||||| | | ||||||| || Sbjct 8151 GG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCGTG 8207 Query 15876 GATACaaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTAGCAAT 15934 || | |||||||||||||||||||| | |||||||| ||| |||||| ||| Sbjct 8208 GA-CGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAAT 8266 Query 15935 CCCGACACCCGTTTTATGAGGTG 15957 |||| |||||||||||| ||||| Sbjct 8267 CCCGGCACCCGTTTTATAAGGTG 8289 Score = 116 bits (128), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 24582 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCAT 24641 |||||||||||||| | ||||||||| || ||||||||||||| ||||||||| || Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 24642 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTA 24701 |||||||| |||||| | ||||||| || |||||| | | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 24702 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 24741 ||||| || || || ||| | |||||||| | ||| |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200988219179792