Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028685.1
Length=62851
Score E
Sequences producing significant alignments: (Bits) Value
seq974 324 6e-84
seq1066 158 5e-34
>seq974
Length=15858
Score = 324 bits (358), Expect = 6e-84
Identities = 561/810 (69%), Gaps = 4/810 (0%)
Strand=Plus/Minus
Query 208 TCAGGCATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAGTGCCCCATCTGT 267
|||| ||||||||| || || |||||| | ||||| ||| || | |||||||||||
Sbjct 809 TCAGTCATCCATGCTCCGTATACATTGAACACCATCTGGGCACTTGCATGCCCCATCTGG 750
Query 268 GACGCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGT 327
||||| || | |||||||||||||||||||| | |||||||||||| || || |||
Sbjct 749 CTGGCAATGAAGCTTGGGTTTGCTCCGGCAGATAATGACCAGCACGCATAAGTGTGTCGT 690
Query 328 GACTGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCT 387
||||| || ||||| ||| | ||| ||||| | || || |||| ||||||| |
Sbjct 689 GACTGGTATGCTTTCCGGTGCCTGATGCCCGCACGCTTAATGGCTGTTTCCCATGAGTCG 630
Query 388 CCGATGGAGCTTACCGCGTAGTTAATACCCGCCT-TGTGATTCTTGCGAACGATTTGCGG 446
|| ||||| |||| |||| ||| ||| ||| | || || || | ||| | || ||
Sbjct 629 CCAATGGAATCTACCTTGTAGATAAAACCTACCTGTTTGCTT-TTTCTAACCACCTGGGG 571
Query 447 ACAGAAAACAAAAGTGCACTCGTGCAAAATTGTTCTTCCGTACTCGCGTAATTTAACAGT 506
|| || ||||| || || || | || | ||| || || |||| || ||| |
Sbjct 570 GTTAAATACGAAAGTACATTCATGATTCACTGAACGTCCATATTCACGTAGTTGAACCTT 511
Query 507 GATCTGATGCTGCCTGCCAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTCAATTGC 566
||| || |||||| | || || | || | ||||| ||||| || | || ||
Sbjct 510 GATGTGGTGCTGCTTACCCAGTCTTGTCATTTCAGCCTGATTTTTCAGGACACTGATAGC 451
Query 567 TGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCAGTCTTTGGTAGCGTAAAATC 626
|| | |||||| | ||||| ||| || | ||| ||||| || ||||| || || ||
Sbjct 450 GGGCTGGATAAGATGCACAACCCTGTTTGTACTTGCTTCAGTTTTAGGTAGAGTGAACTC 391
Query 627 ACCTATTTTTGTAAAATTTCTTCGCACTGTTATCGTGCCAGCTTTCAGGTCGATATCCTC 686
||| | ||| ||| |||| | | | || || || || |||||||| |||||||| ||
Sbjct 390 ACCGAGTTTCGTATAATTGCGCCTGATAGTAATAGTTCCTGCTTTCAGATCGATATCTTC 331
Query 687 CCATGCAAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACTGTCCAGAG 746
||| || || | | | | ||||||||| ||||| ||||| | ||||||| || ||| ||
Sbjct 330 CCAGGCCAGGGAGACCAGTTCACCGTGACGCATTCCTGTGTACACAGCCAATGACCACAG 271
Query 747 GTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCTCTGGTCAG 806
|||||| ||||| ||||| |||| ||||| || || || |||| || || | || ||
Sbjct 270 GTTTTTCGTCTGCTGATGTCGGCAAGCATCTATCAGGCGAATAAATTCGTCACGAGTTAG 211
Query 807 TGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGGTTTTTCTC 866
||||| ||| ||| | | | | | || || | ||| | || || ||| ||
Sbjct 210 CGGATCTGGCTCTGCCCTGGCTCTTTTAAGAGGCTTAATTCCCTGGAAGGGATTTGCTTC 151
Query 867 CAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCGGCTGTTGTTGTCATGTAATAGT 925
| || |||| || || ||||| ||| |||||||| || |||| ||||||||||| |
Sbjct 150 TAAGTAACCGTGATCTGCAGCAAA-CTGAAACATTCCAGCGATTGTCGTCATGTAATAAT 92
Query 926 TCACTGTGGGTACGGTTCTTCCTTTTCGGGACGTGCTGGTTTTCCTGCTTCCCTTTTCCC 985
| || || ||| | | ||||||| | | || ||||| | || | ||
Sbjct 91 TTACAGTAACGACGCTCCGTCCTTTTGCTGCTGCTTTGTTTTTCGTTGAATTCTGATACC 32
Query 986 CGGTCAGTAAATCTTTCCTGATAAACAGCA 1015
||||||| ||||||||||||||| ||||||
Sbjct 31 CGGTCAGCAAATCTTTCCTGATATACAGCA 2
>seq1066
Length=13853
Score = 158 bits (174), Expect = 5e-34
Identities = 197/263 (75%), Gaps = 8/263 (3%)
Strand=Plus/Plus
Query 15699 ACTGGGATAGTAGCCATAATGGCAGCCTCCTTGATTGGTGATTGATAACCACCGCTGGAG 15758
|||||||| |||||||||||||||||||||||||| ||||| | ||||| | ||||
Sbjct 8031 ACTGGGATCGTAGCCATAATGGCAGCCTCCTTGATCGGTGAAATACTTCCACCACCGGAG 8090
Query 15759 GTAGCAAGCTCGCTGGCGGTGGACTGTACAGGGTTGCTACAACTGGCAATCAAGGGAACC 15818
|| || |||||||| || |||||| |||||||| || || ||| ||||||| ||||
Sbjct 8091 GTGCAAATCTCGCTGGTGGCGGACTGAACAGGGTTTGCACTACCGGCGATCAAGGAAACC 8150
Query 15819 AGCCCGACCGAAGTCGGC-CCCAT--ACAGCCCACCATTGATAAGATGTGCGTGTATGTC 15875
| ||| | ||||| ||| | ||||||||||| | | ||||||| ||
Sbjct 8151 GG--CGAGC-CTTTCGGCTCCCCTGCCCAGCCCACCATAATTCTGGCGTGCGTGAGCGTG 8207
Query 15876 GATACaaaaaaaaGACGCTGGCGCGTC-TGTATCGCCTCGATTGTCAGCGGGGTAGCAAT 15934
|| | |||||||||||||||||||| | |||||||| ||| |||||| |||
Sbjct 8208 GA-CGATAAAAAAGACGCTGGCGCGTCGTATATCGCCTTGATCAATTCCGGGGTGCAAAT 8266
Query 15935 CCCGACACCCGTTTTATGAGGTG 15957
|||| |||||||||||| |||||
Sbjct 8267 CCCGGCACCCGTTTTATAAGGTG 8289
Score = 116 bits (128), Expect = 1e-21
Identities = 124/163 (76%), Gaps = 3/163 (2%)
Strand=Plus/Minus
Query 24582 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCAT 24641
|||||||||||||| | ||||||||| || ||||||||||||| ||||||||| ||
Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997
Query 24642 GAGGATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTA 24701
|||||||| |||||| | ||||||| || |||||| | | ||||| ||||||
Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937
Query 24702 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 24741
||||| || || || ||| | |||||||| | ||| ||||
Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200988219179792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |