Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq1947 524 2e-144
>seq1947
Length=4488
Score = 524 bits (580), Expect = 2e-144
Identities = 322/342 (94%), Gaps = 1/342 (0%)
Strand=Plus/Plus
Query 16752 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCG 16811
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3636 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTT-TCCAGTATCGATTTTCCG 3694
Query 16812 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 16871
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3695 ATTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 3754
Query 16872 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 16931
|||||||||||||||| ||||||||||| |||||||||||||| || ||| | ||||||
Sbjct 3755 CGATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCA 3814
Query 16932 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 16991
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3815 TCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTC 3874
Query 16992 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 17051
| ||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||||||||
Sbjct 3875 CGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGC 3934
Query 17052 TCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGA 17093
|||||||||||||||| |||||||||||||||||||||| ||
Sbjct 3935 TCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCTGA 3976
Score = 522 bits (578), Expect = 7e-144
Identities = 321/341 (94%), Gaps = 1/341 (0%)
Strand=Plus/Plus
Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3637 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTT-TCCAGTATCGATTTTCCGA 3695
Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3696 TTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 3755
Query 39498 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 39557
||||||||||||||| ||||||||||| |||||||||||||| || ||| | ||||||
Sbjct 3756 GATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCAT 3815
Query 39558 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 39617
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3816 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 3875
Query 39618 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 39677
||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||||||||
Sbjct 3876 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 3935
Query 39678 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGA 39718
||||||||||||||| |||||||||||||||||||||| ||
Sbjct 3936 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCTGA 3976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132153477573600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |