Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq1947 524 2e-144 >seq1947 Length=4488 Score = 524 bits (580), Expect = 2e-144 Identities = 322/342 (94%), Gaps = 1/342 (0%) Strand=Plus/Plus Query 16752 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCG 16811 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3636 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTT-TCCAGTATCGATTTTCCG 3694 Query 16812 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 16871 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3695 ATTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 3754 Query 16872 CGATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCA 16931 |||||||||||||||| ||||||||||| |||||||||||||| || ||| | |||||| Sbjct 3755 CGATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCA 3814 Query 16932 CCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTC 16991 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3815 TCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTC 3874 Query 16992 CACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGC 17051 | ||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||||||| Sbjct 3875 CGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGC 3934 Query 17052 TCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGA 17093 |||||||||||||||| |||||||||||||||||||||| || Sbjct 3935 TCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCTGA 3976 Score = 522 bits (578), Expect = 7e-144 Identities = 321/341 (94%), Gaps = 1/341 (0%) Strand=Plus/Plus Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 3637 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTT-TCCAGTATCGATTTTCCGA 3695 Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3696 TTCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 3755 Query 39498 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 39557 ||||||||||||||| ||||||||||| |||||||||||||| || ||| | |||||| Sbjct 3756 GATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCAT 3815 Query 39558 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 39617 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3816 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 3875 Query 39618 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 39677 ||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||||||||| Sbjct 3876 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 3935 Query 39678 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGA 39718 ||||||||||||||| |||||||||||||||||||||| || Sbjct 3936 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCTGA 3976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132153477573600