Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028700.1
Length=37976
Score E
Sequences producing significant alignments: (Bits) Value
seq729 174 4e-39
>seq729
Length=25020
Score = 174 bits (192), Expect = 4e-39
Identities = 225/311 (72%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 9195 TGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAG 9254
||||||||||||| |||||||||||||| | || ||||| | || | ||||| || |
Sbjct 1324 TGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCG 1265
Query 9255 CGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAA 9314
| | | || ||| || ||||| || | || || || || | |||| | ||||
Sbjct 1264 CAAATGGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAA 1205
Query 9315 ACGGGGAGAGAGAAGCAGATTTCATTAATTGTGTTATCTGGCGACAGTCTGCTGAAAATT 9374
|||| | | || || ||||| || |||||||| || ||||| | || || |||| ||
Sbjct 1204 GCGGGAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTT 1145
Query 9375 TAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGTA 9434
|||| || | || ||||| || | | || || || || ||||| || ||| | |
Sbjct 1144 TAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAA 1085
Query 9435 ACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGAGAACTTCC 9494
| || ||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1084 ATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCC 1025
Query 9495 AAATGTTGGAA 9505
|| | ||||||
Sbjct 1024 AATTATTGGAA 1014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121395608527536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |