Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq732 93.3 5e-14
>seq732
Length=24842
Score = 93.3 bits (102), Expect = 5e-14
Identities = 201/297 (68%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 120514 TACGATGCATTCCAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAAACGGACAG 120573
|||||||| ||||| | || || |||||||| || || | | ||||| |||
Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214
Query 120574 ACTCCTTTTGTAACAATTACATTTGGTACGGGAACTGACTGGACTGAA---CGAATGATT 120630
|| || |||||||| || |||||| ||| || |||| ||| || |||||
Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATT 271
Query 120631 CAGAAAGCAATTCTGAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACTCCTATT 120690
||| || | || ||| || ||||| ||| || ||| | | | |||| | |
Sbjct 272 CAGGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTG 331
Query 120691 TTCCCTAAGCTTGTTATGTTCG-TTGAAGAAGGTGTTAATCTTTATAAAGACGATCCGAA 120749
||||| || || || | | || || || ||| | || | | | |||| |||||||||
Sbjct 332 TTCCCGAAACTGGTGTT-TGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 390
Query 120750 CTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGGATGTATCCTGATAT 120806
||| || || || ||||| || || |||||||||||||| | |||||||| |||||
Sbjct 391 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATAT 447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534641023955840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |