Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq732 93.3 5e-14 >seq732 Length=24842 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 120514 TACGATGCATTCCAAGCTTATGAATATGAAGTAAATACTCTCTTTAGTTCAAACGGACAG 120573 |||||||| ||||| | || || |||||||| || || | | ||||| ||| Sbjct 155 TACGATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAG 214 Query 120574 ACTCCTTTTGTAACAATTACATTTGGTACGGGAACTGACTGGACTGAA---CGAATGATT 120630 || || |||||||| || |||||| ||| || |||| ||| || ||||| Sbjct 215 ACGCCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGG---GAATCGCGCCTGATT 271 Query 120631 CAGAAAGCAATTCTGAAAAATCGTATTAAAGGTCTTGGTCGTGATGGGATAACTCCTATT 120690 ||| || | || ||| || ||||| ||| || ||| | | | |||| | | Sbjct 272 CAGGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTG 331 Query 120691 TTCCCTAAGCTTGTTATGTTCG-TTGAAGAAGGTGTTAATCTTTATAAAGACGATCCGAA 120749 ||||| || || || | | || || || ||| | || | | | |||| ||||||||| Sbjct 332 TTCCCGAAACTGGTGTT-TGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGAA 390 Query 120750 CTATGATATTAAGCAGCTTGCTCTAGAGTGCGCAAGCAAAAGGATGTATCCTGATAT 120806 ||| || || || ||||| || || |||||||||||||| | |||||||| ||||| Sbjct 391 CTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATAT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534641023955840