Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028821.1 Length=40670 Score E Sequences producing significant alignments: (Bits) Value seq729 98.7 3e-16 >seq729 Length=25020 Score = 98.7 bits (108), Expect = 3e-16 Identities = 205/298 (69%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 28162 TCTGCAACTACTTCAGTCACAAATATTCGACGACCTTCTTGATTTTCATAACTGCATGAT 28221 || ||||| ||||| |||||| | | || | |||| |||||||||||| | | || | Sbjct 1033 TCAGCAACAACTTCTGTCACATAGACACGTTGCCCTTGCTGATTTTCATAATTTCTTGTT 1092 Query 28222 TGAATTCGACCATCAACGCCTGCTAATTTTCCTTT---CG-ATAAATAGTTGTTAACATT 28277 || || || ||| || ||| | ||||||| || |||| ||| | | | | Sbjct 1093 TGGATACGGCCAGTCACACCTAAAAGAGTTCCTTTGCGCGCATAATTAGCT----AAAGT 1148 Query 28278 GTGTGCTTGTTTTCTAAATACGATAATATTGATAAAATCTGCTTCACG-TTCACCCTGTG 28336 | |||| ||| | | | | | |||||||||||| || || || ||| | || || Sbjct 1149 TTCTGCTGATTTCCGCCAAATTACACAATTGATAAAATCCGCCTCGCGATTCCCGCTTTG 1208 Query 28337 CGTTTGTGAAATTACGATTAACTGCTAGTGTGAAAGTTGCAACATCAATTCCACTTTGAG 28396 || || ||||||||||| || |||| || || || |||||| | | ||| |||| | Sbjct 1209 -ATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTGGCAACACCTGTACCA-TTTGCG 1266 Query 28397 TTGT-TCTAAATTCAGGATCTTTAGTTAAACGACCTACTAATACGACTCTGTTAATCA 28453 ||| | || |||||||| || ||||||||||| |||| ||| || | ||||||| Sbjct 1267 GTGTAGCGTAAATCAGGATCCTTTGTTAAACGACCAACTAGTACAACATTATTAATCA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130015983069504