Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq732 167 4e-36 >seq732 Length=24842 Score = 167 bits (184), Expect = 4e-36 Identities = 746/1162 (64%), Gaps = 45/1162 (4%) Strand=Plus/Minus Query 125179 CACACGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCA 125237 ||| |||| |||| ||||||||| ||||| || ||| | || | ||| | || ||| Sbjct 1293 CACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGC-TGATAGCT 1235 Query 125238 -TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATA 125296 |||||||| || || || | || | ||||| | || || || |||| | || Sbjct 1234 GTAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTA 1175 Query 125297 ACAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAA 125356 || |||||||||||||| || | ||||| | |||||||| || || || || | Sbjct 1174 GCAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTA 1115 Query 125357 TGGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATT 125416 |||||||| ||||| ||| || | ||| || ||| ||||| || |||| || | Sbjct 1114 CGGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATCGGT 1055 Query 125417 GATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGA 125476 | || | | || || | | | |||||||| ||||| || || || || Sbjct 1054 CACGCCCGGCACCACGCCAAACTCAGCAGTATCGAGACGGCAGAAGCGGTCGCACAGGTT 995 Query 125477 TTCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGG- 125535 |||||| || || ||||| ||||||||||| || ||||| ||||||||| ||| Sbjct 994 TTCACTCGGCGTGCTGTAGAGACTGAAACCATAACCCGTTTCTTCTTTCCACTTATCCAC 935 Query 125536 TGT---ACGCTCTAAGAGTTTCCACAAT-------CTTTTCAGCGAGGAATTGTTTGTGT 125585 || |||| ||| ||| ||||| | |||| ||| | | || | || Sbjct 934 TGCCTGACGC----AGACGTTCAACAATGGCGATACCTTTC-GCGCGAAGCTGCTCGT-- 882 Query 125586 TGTGACTCAAACGTATGCATGTCTTTATCTGGCGAA-AGCAACGTTACTGCTT-CGTGTA 125643 || | |||| |||| | | | |||| ||| ||||| || || |||| | Sbjct 881 --TGTCGTAAAC--ATGCTCGCC-------GCCGAACAGCG-CGTTAATGGTTTCGTGGA 834 Query 125644 ACCCGATATAACCAAGCGAGATACTTGAACGACCGTGTTTGAAAACTTCACTGACTTTAT 125703 ||||| ||||| ||||| ||| | |||||||| |||||| | |||| || | || Sbjct 833 TGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAAGATTTCAGAAACATCAT 774 Query 125704 CAGTTGGCTTCAAG-CGTACGCCCATTGCACCTTCACAGTATAGA--ATTGGAGCAACTG 125760 | || || | || || ||||| |||||||| || |||||| || || || || Sbjct 773 C-GTCAGCATTGAGACGCACGCCACAAGCACCTTC-CA-TATAGAGGATCGGGGCCACGC 717 Query 125761 ATGCAGTTACATCATCAAAACGCTTAATACGCAACATCAATGCTT--CGTAAGCTAGTTT 125818 || | || | || | ||| ||||| ||||| || | ||| || || Sbjct 716 GCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGT--GCCAGCAC 659 Query 125819 ACAACGCTCGTGTAAGATCTCGAAGAAGCGTTCAGTATCACCCGATGCTTCAATAGCAAT 125878 ||| || | | | || ||||| | ||| || |||||| | |||||| Sbjct 658 CAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAAT 599 Query 125879 ACGCGGGATATTGATTGAGACGACGCCTAAGTTATTACGACCATCGAATACCGTTTCACC 125938 |||||| | || | || ||||| | ||| |||||||||||| | | || || Sbjct 598 ACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCC 539 Query 125939 ATCTTCGTTCTTCCAGTCACCCAAGAATGAGCGACAGCCCATTGGAGACTTAAACCCACC 125998 | ||| || | ||| | || | ||| ||| |||||||| || | |||||| ||| Sbjct 538 GTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAACC 479 Query 125999 AGTCGTTTCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATACGCTTACTTGCACA 126058 || || |||| | || ||||||| || || || ||||| ||||| ||||| || Sbjct 478 GGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCA 419 Query 126059 TTCAAGAGCTAACTTTTTGATGCCGTAGCACGGGTCGCCTTCTTTCAGATTCACGCCGTC 126118 || || || | || ||||||| ||||| ||| ||||||| ||| | |||| || || Sbjct 418 CTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCATC 359 Query 126119 TCTCAATGTGAAAACAAGCTTAGGGAAAATAGCAGTTTTCTTAGTCTTACCTAGACCTGC 126178 | | | || || || || ||||| | |||||||| | ||||| || ||||| Sbjct 358 GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTGC 299 Query 126179 AATACGATTCTGAAGAATACTTTTTTGAATAAGTTTTTCTTCCCACGACGTACCTAACCC 126238 ||||| || | || ||| || ||||| || |||||| || || | || Sbjct 298 GATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGACC 239 Query 126239 GAAGTTGATTGTCGTGAATGGTGTCTGACCGTTTGAAGTCTGCATCGTATTGACTTGATA 126298 || | || || || ||||||||||| | || |||| || || |||| || Sbjct 238 AAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTA 179 Query 126299 TTCAAACGTCTGGAATGCATCG 126320 || | || |||||| |||||| Sbjct 178 CTCCAGCGACTGGAAGGCATCG 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793712364500480