Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028829.1
Length=248088
Score E
Sequences producing significant alignments: (Bits) Value
seq732 167 4e-36
>seq732
Length=24842
Score = 167 bits (184), Expect = 4e-36
Identities = 746/1162 (64%), Gaps = 45/1162 (4%)
Strand=Plus/Minus
Query 125179 CACACGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCA 125237
||| |||| |||| ||||||||| ||||| || ||| | || | ||| | || |||
Sbjct 1293 CACTCGTAGCACTCATCAATCGGTGTATTGGTGCCGTAATACGGTACATGC-TGATAGCT 1235
Query 125238 -TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATA 125296
|||||||| || || || | || | ||||| | || || || |||| | ||
Sbjct 1234 GTAATCCCAGACATCTTCCAGCGCCTTCAGGTTGTGCTGAATGTTTGGATACTCGCCGTA 1175
Query 125297 ACAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAA 125356
|| |||||||||||||| || | ||||| | |||||||| || || || || |
Sbjct 1174 GCAAATGAAACCACCGTTCGCCAGCGGCGGGTAAGGCGCTTCAAAGTCGATCTTGTCGTA 1115
Query 125357 TGGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATT 125416
|||||||| ||||| ||| || | ||| || ||| ||||| || |||| || |
Sbjct 1114 CGGGTTCACCTTCTTCTCCACATCGAGGTGGAAACTGTTGGTGTAGTAACCTTTATCGGT 1055
Query 125417 GATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCGA 125476
| || | | || || | | | |||||||| ||||| || || || ||
Sbjct 1054 CACGCCCGGCACCACGCCAAACTCAGCAGTATCGAGACGGCAGAAGCGGTCGCACAGGTT 995
Query 125477 TTCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGG- 125535
|||||| || || ||||| ||||||||||| || ||||| ||||||||| |||
Sbjct 994 TTCACTCGGCGTGCTGTAGAGACTGAAACCATAACCCGTTTCTTCTTTCCACTTATCCAC 935
Query 125536 TGT---ACGCTCTAAGAGTTTCCACAAT-------CTTTTCAGCGAGGAATTGTTTGTGT 125585
|| |||| ||| ||| ||||| | |||| ||| | | || | ||
Sbjct 934 TGCCTGACGC----AGACGTTCAACAATGGCGATACCTTTC-GCGCGAAGCTGCTCGT-- 882
Query 125586 TGTGACTCAAACGTATGCATGTCTTTATCTGGCGAA-AGCAACGTTACTGCTT-CGTGTA 125643
|| | |||| |||| | | | |||| ||| ||||| || || |||| |
Sbjct 881 --TGTCGTAAAC--ATGCTCGCC-------GCCGAACAGCG-CGTTAATGGTTTCGTGGA 834
Query 125644 ACCCGATATAACCAAGCGAGATACTTGAACGACCGTGTTTGAAAACTTCACTGACTTTAT 125703
||||| ||||| ||||| ||| | |||||||| |||||| | |||| || | ||
Sbjct 833 TGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAAGATTTCAGAAACATCAT 774
Query 125704 CAGTTGGCTTCAAG-CGTACGCCCATTGCACCTTCACAGTATAGA--ATTGGAGCAACTG 125760
| || || | || || ||||| |||||||| || |||||| || || || ||
Sbjct 773 C-GTCAGCATTGAGACGCACGCCACAAGCACCTTC-CA-TATAGAGGATCGGGGCCACGC 717
Query 125761 ATGCAGTTACATCATCAAAACGCTTAATACGCAACATCAATGCTT--CGTAAGCTAGTTT 125818
|| | || | || | ||| ||||| ||||| || | ||| || ||
Sbjct 716 GCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGT--GCCAGCAC 659
Query 125819 ACAACGCTCGTGTAAGATCTCGAAGAAGCGTTCAGTATCACCCGATGCTTCAATAGCAAT 125878
||| || | | | || ||||| | ||| || |||||| | ||||||
Sbjct 658 CAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTTCATCGCCTTTTGCTTCCAGAGCAAT 599
Query 125879 ACGCGGGATATTGATTGAGACGACGCCTAAGTTATTACGACCATCGAATACCGTTTCACC 125938
|||||| | || | || ||||| | ||| |||||||||||| | | || ||
Sbjct 598 ACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGCTCGCC 539
Query 125939 ATCTTCGTTCTTCCAGTCACCCAAGAATGAGCGACAGCCCATTGGAGACTTAAACCCACC 125998
| ||| || | ||| | || | ||| ||| |||||||| || | |||||| |||
Sbjct 538 GTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTAAACGAACC 479
Query 125999 AGTCGTTTCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATACGCTTACTTGCACA 126058
|| || |||| | || ||||||| || || || ||||| ||||| ||||| ||
Sbjct 478 GGTGACTTTCACTACCTGATCGTAGTTCAGGATATCCGGATACATGCGCTTGCTTGCGCA 419
Query 126059 TTCAAGAGCTAACTTTTTGATGCCGTAGCACGGGTCGCCTTCTTTCAGATTCACGCCGTC 126118
|| || || | || ||||||| ||||| ||| ||||||| ||| | |||| || ||
Sbjct 418 CTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTATGGTTCAGACCATC 359
Query 126119 TCTCAATGTGAAAACAAGCTTAGGGAAAATAGCAGTTTTCTTAGTCTTACCTAGACCTGC 126178
| | | || || || || ||||| | |||||||| | ||||| || |||||
Sbjct 358 GCGAATCGCAAACACCAGTTTCGGGAACACCGCAGTTTTACGGTTTTTACCGAGGCCTGC 299
Query 126179 AATACGATTCTGAAGAATACTTTTTTGAATAAGTTTTTCTTCCCACGACGTACCTAACCC 126238
||||| || | || ||| || ||||| || |||||| || || | ||
Sbjct 298 GATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTCCCAGCTGGTGCCCAGACC 239
Query 126239 GAAGTTGATTGTCGTGAATGGTGTCTGACCGTTTGAAGTCTGCATCGTATTGACTTGATA 126298
|| | || || || ||||||||||| | || |||| || || |||| ||
Sbjct 238 AAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTA 179
Query 126299 TTCAAACGTCTGGAATGCATCG 126320
|| | || |||||| ||||||
Sbjct 178 CTCCAGCGACTGGAAGGCATCG 157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793712364500480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |