Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq1599 93.3 4e-14 >seq1599 Length=6876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/122 (80%), Gaps = 8/122 (7%) Strand=Plus/Plus Query 27750 GGGTTCAAATCCCGTTGTCGG-CTAAGTTAATTGGAAGGGT-ACTCAAGT--GGATAAAA 27805 |||||| |||||||| ||| ||| ||||| | ||| | || ||||| || | || Sbjct 6719 GGGTTCGAATCCCGTA--CGGACTATTATAATTTGGAGGATTACCCAAGTCCGGCTGAAG 6776 Query 27806 GAGGGCGGTCTTGAAAACCGCTAGGCGTGTAAAAGCGTGCGTGGGTTCGAATCCCAC-TC 27864 | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 6777 G-GAACGGTCTTGAAAACCGTCAGGCGTGTAAAAGCGTGCGTGGGTTCGAATCCCACATC 6835 Query 27865 CT 27866 || Sbjct 6836 CT 6837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519800194976960