Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq732 131 1e-25 >seq732 Length=24842 Score = 131 bits (144), Expect = 1e-25 Identities = 272/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 51273 TTCTGCCTGTTTTCCCGCGTTGAATGGTCTGGCATCCGGGTTTCCTAAGTAACCACAAAC 51332 |||| |||| || || ||||| ||||| | ||||||||| | ||||| || || || || Sbjct 1447 TTCTTCCTGCTTACCGGCGTTAAATGGACGTGCATCCGGGCTACCTAAATATCCGCACAC 1388 Query 51333 CCTGCGAGTGACAGAGCAGCTTTCTTTGTCGTTATTACCACACTTAGGGCACTTGAAACC 51392 | |||||| || || | ||| | |||||||| || ||||| |||| || Sbjct 1387 GCGGCGAGTCACCGACACACGGGAGGCGTCATGGTTACCACATTTCGGGCAAGTGAAGCC 1328 Query 51393 TTCCGAGGTGCATAGGAACTCTCCTTTATACCCGCACTTAAAGCACTCGTCTATTGGGGT 51452 || |||||| |||||| || || | || |||| ||||||| || || || || Sbjct 1327 TTTGCTGGTGCACTCGAACTCACCGGTAAAGCCACACTCGTAGCACTCATCAATCGGTGT 1268 Query 51453 GTTAGTACCATAATACGGTACTTGATAGTACGCGTAATTCCACACATCTTCCAATGCTTC 51512 || || || ||||||||||| || | || ||||| ||| |||||||||| || | Sbjct 1267 ATTGGTGCCGTAATACGGTACATGCTGATAGCTGTAATCCCAGACATCTTCCAGCGCCTT 1208 Query 51513 TATGTTATTAATCATAGAAGGGAATTCCCCGTAACATATGTGGCCGCC---CG-CTGAGT 51568 | ||| | || || | || ||||| || ||| || || || | | | Sbjct 1207 CAGGTTGTGCTGAATGTTTGGATACTCGCCGTAGCAAATGAAACCACCGTTCGCCAGCGG 1148 Query 51569 AGGGTACGAACTGCGCTTCAAAATCGATCTTCTCGTAAGGTGTTACTTTCTTGGCTACGT 51628 ||||| | |||||||||| |||||||| ||||| || | || ||||| | || | Sbjct 1147 CGGGTAAG----GCGCTTCAAAGTCGATCTTGTCGTACGGGTTCACCTTCTTCTCCACAT 1092 Query 51629 CTAGGTGGAATGAGTTGGTCAGGTATCCTTTATCTGTGACACC 51671 | |||||||| |||||| ||| |||||||| || || || Sbjct 1091 CGAGGTGGAAACTGTTGGTGTAGTAACCTTTATCGGTCACGCC 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371497982209684