Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_028927.1
Length=167298
Score E
Sequences producing significant alignments: (Bits) Value
seq732 87.8 2e-12
>seq732
Length=24842
Score = 87.8 bits (96), Expect = 2e-12
Identities = 303/464 (65%), Gaps = 24/464 (5%)
Strand=Plus/Minus
Query 113236 GCGATACGAGGAAGATTCAGTGTTACAACACCGAGATTATTACGTCCATCAAGAATTTCA 113295
|| ||||| || || ||||| | | || ||||| || ||||| ||||| | || |
Sbjct 603 GCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGC 544
Query 113296 TTGCCAGTCGAATCTTTCCATACGCCCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 113355
| ||| | || || ||| ||||| | ||| || ||||| ||||| || | | |
Sbjct 543 TCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA--A 486
Query 113356 ACAGATGAACCAGTGATAGCTTT-ATTAT----TCTTAGCTGAAATAATATCAGGATACA 113410
|| ||||| |||| |||| | || || ||| | | ||||| |||||||
Sbjct 485 AC----GAACCGGTGA---CTTTCACTACCTGATCGTAGTTCAGG--ATATCCGGATACA 435
Query 113411 TCCTTTTGCTTGCGCACTCTAGAGCAAGTTGCTTAATGTCGTAATTCGGATCGTCTTTAT 113470
| | |||||||||||||| || || || || || |||||||| ||||||||| |||| |
Sbjct 434 TGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTT 375
Query 113471 AAAGATTAACGCCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAATAGGAGTTATTCCA 113529
| | || | || || || || | | || || || ||||| | | |||| | |
Sbjct 374 TATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACACCGCAGTTTTACGG 316
Query 113530 TCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG---TTCA 113586
| ||| || ||| ||||| || ||| || | || |||||||| || |||
Sbjct 315 TTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTC- 257
Query 113587 GTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTTTGTCCGTTTGAACTA 113646
|||| || ||| |||||| || |||||||| || || || ||||| | |
Sbjct 256 --CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTG 199
Query 113647 AAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 113690
|| || |||||||| || || | ||||| ||||||||
Sbjct 198 TGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535197795030080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |