Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq732 87.8 2e-12 >seq732 Length=24842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 303/464 (65%), Gaps = 24/464 (5%) Strand=Plus/Minus Query 113236 GCGATACGAGGAAGATTCAGTGTTACAACACCGAGATTATTACGTCCATCAAGAATTTCA 113295 || ||||| || || ||||| | | || ||||| || ||||| ||||| | || | Sbjct 603 GCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGC 544 Query 113296 TTGCCAGTCGAATCTTTCCATACGCCCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 113355 | ||| | || || ||| ||||| | ||| || ||||| ||||| || | | | Sbjct 543 TCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA--A 486 Query 113356 ACAGATGAACCAGTGATAGCTTT-ATTAT----TCTTAGCTGAAATAATATCAGGATACA 113410 || ||||| |||| |||| | || || ||| | | ||||| ||||||| Sbjct 485 AC----GAACCGGTGA---CTTTCACTACCTGATCGTAGTTCAGG--ATATCCGGATACA 435 Query 113411 TCCTTTTGCTTGCGCACTCTAGAGCAAGTTGCTTAATGTCGTAATTCGGATCGTCTTTAT 113470 | | |||||||||||||| || || || || || |||||||| ||||||||| |||| | Sbjct 434 TGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTT 375 Query 113471 AAAGATTAACGCCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAATAGGAGTTATTCCA 113529 | | || | || || || || | | || || || ||||| | | |||| | | Sbjct 374 TATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACACCGCAGTTTTACGG 316 Query 113530 TCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG---TTCA 113586 | ||| || ||| ||||| || ||| || | || |||||||| || ||| Sbjct 315 TTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTC- 257 Query 113587 GTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTTTGTCCGTTTGAACTA 113646 |||| || ||| |||||| || |||||||| || || || ||||| | | Sbjct 256 --CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTG 199 Query 113647 AAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 113690 || || |||||||| || || | ||||| |||||||| Sbjct 198 TGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535197795030080