Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_028984.1 Length=30664 Score E Sequences producing significant alignments: (Bits) Value seq729 150 4e-32 >seq729 Length=25020 Score = 150 bits (166), Expect = 4e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27879 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 27938 ||||| | || || || |||||||||| ||||||| || | || || || ||||| Sbjct 1241 TTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCGGATTTT 1182 Query 27939 ATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGG 27998 || ||| || |||||||| | ||| |||| ||||||||| | || ||||| Sbjct 1181 ATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGA 1122 Query 27999 ACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACAAGGTCAG 28058 ||||||||||| | ||||| || || || || | ||||||||||| || ||||| || Sbjct 1121 ACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAA 1062 Query 28059 CGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAA 28106 ||||| || || |||||||||||||| || ||||||||| | |||||| Sbjct 1061 CGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAA 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97998363297072