Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq732 132 5e-26
>seq732
Length=24842
Score = 132 bits (146), Expect = 5e-26
Identities = 455/714 (64%), Gaps = 41/714 (6%)
Strand=Plus/Minus
Query 141211 GTTTCATGCAGTCCGATGTATCCCAGACTGATAGAGCTACGCCCATTTTTGAACAGTTCC 141270
||||| || | |||||||| ||||| ||||| ||| || |||||||| | |||
Sbjct 843 GTTTCGTGGATGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAAGATTTCA 784
Query 141271 AGAATTTCATCATCAGGATTCAGACGGACACCAAATGCACCTTCTGTGTACAGGATAGGC 141330
|| ||||| |||| ||| ||||| || ||| | |||||||| | || ||||| ||
Sbjct 783 GAAACATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGG 724
Query 141331 GCAACGCTGGCTTTAACACCACGTAGGCTATCAATTCGAGTCATCAGGGCTTCAAAACAC 141390
|| |||| ||||| || || || | | | || || |||||||| || | | |
Sbjct 723 GCCACGCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCC 664
Query 141391 AAACCCAGACGATCATCAAGAATACGCCAAAAAGCCTCGTGTGNNNNNNNNNNNNNNNNN 141450
| ||||||| ||||| || | ||| || | | |
Sbjct 663 AGCACCAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTT---------CATCGCCTTTT 613
Query 141451 NNNNNNAGAGCAATACGCGGGAGGTTAATTGTCACCACACCCAAGTTATTACGTCCATCC 141510
|||||||||||||| ||||| | | | ||| || | ||| ||||| |||||
Sbjct 612 GCTTCCAGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCG 553
Query 141511 AGAATTTCATTACCGTTATCATCATGCCACACACTAAGGAAACTGCGACAACCCATAGGA 141570
| || | | ||||| |||| | |||||| | ||||| ||||| || ||||| ||
Sbjct 552 TGGATCTGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGG 493
Query 141571 GATACAGGAACGCTAGAACCAGTGATAAGGCGGTTATTAGCCGAAC-----TAATGATAT 141625
| | | |||| |||| |||| | | | || | || | | | |||||
Sbjct 492 GTTTTA--AACG----AACCGGTGA-----CTTTCACTACCTGATCGTAGTTCAGGATAT 444
Query 141626 CTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTTACGAT 141685
| || ||||| || || ||||| ||||| |||| ||||||||||| ||||| |||
Sbjct 443 CCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGAT 384
Query 141686 CCCCAGGATTCATGTTTACACCTTTTTCCAT---AAACATGACCAGTTTAGGGAACACAG 141742
| || || ||| | ||| | || |||| |||||||| |||||||| |
Sbjct 383 CGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAACACCG 327
Query 141743 GGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGATCA 141802
|| ||| | |||||| || || |||||||| ||| || | || ||| ||||
Sbjct 326 CAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCA 267
Query 141803 TTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGTGTTTG 141857
|| |||||| || || ||| ||| || || || || || || ||
Sbjct 266 GGCG-----CGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212
Query 141858 TCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATC 141911
|||||||| || ||||| ||||| |||||||| || ||| ||||| |||||
Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATC 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568444067796480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |