Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq732 132 5e-26 >seq732 Length=24842 Score = 132 bits (146), Expect = 5e-26 Identities = 455/714 (64%), Gaps = 41/714 (6%) Strand=Plus/Minus Query 141211 GTTTCATGCAGTCCGATGTATCCCAGACTGATAGAGCTACGCCCATTTTTGAACAGTTCC 141270 ||||| || | |||||||| ||||| ||||| ||| || |||||||| | ||| Sbjct 843 GTTTCGTGGATGCCGATGTAACCCAGCGAAATAGACGCACGACCGTTTTTGAAGATTTCA 784 Query 141271 AGAATTTCATCATCAGGATTCAGACGGACACCAAATGCACCTTCTGTGTACAGGATAGGC 141330 || ||||| |||| ||| ||||| || ||| | |||||||| | || ||||| || Sbjct 783 GAAACATCATCGTCAGCATTGAGACGCACGCCACAAGCACCTTCCATATAGAGGATCGGG 724 Query 141331 GCAACGCTGGCTTTAACACCACGTAGGCTATCAATTCGAGTCATCAGGGCTTCAAAACAC 141390 || |||| ||||| || || || | | | || || |||||||| || | | | Sbjct 723 GCCACGCGCGCTTTCACGCCTTCGAGACGAGCGATACGGGTCATCAGCGCCTTACGTGCC 664 Query 141391 AAACCCAGACGATCATCAAGAATACGCCAAAAAGCCTCGTGTGNNNNNNNNNNNNNNNNN 141450 | ||||||| ||||| || | ||| || | | | Sbjct 663 AGCACCAGACGTTCATCCAGCAGCTTCCAGAAGGTGGCTT---------CATCGCCTTTT 613 Query 141451 NNNNNNAGAGCAATACGCGGGAGGTTAATTGTCACCACACCCAAGTTATTACGTCCATCC 141510 |||||||||||||| ||||| | | | ||| || | ||| ||||| ||||| Sbjct 612 GCTTCCAGAGCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCG 553 Query 141511 AGAATTTCATTACCGTTATCATCATGCCACACACTAAGGAAACTGCGACAACCCATAGGA 141570 | || | | ||||| |||| | |||||| | ||||| ||||| || ||||| || Sbjct 552 TGGATCTGCTCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGG 493 Query 141571 GATACAGGAACGCTAGAACCAGTGATAAGGCGGTTATTAGCCGAAC-----TAATGATAT 141625 | | | |||| |||| |||| | | | || | || | | | ||||| Sbjct 492 GTTTTA--AACG----AACCGGTGA-----CTTTCACTACCTGATCGTAGTTCAGGATAT 444 Query 141626 CTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTTACGAT 141685 | || ||||| || || ||||| ||||| |||| ||||||||||| ||||| ||| Sbjct 443 CCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGAT 384 Query 141686 CCCCAGGATTCATGTTTACACCTTTTTCCAT---AAACATGACCAGTTTAGGGAACACAG 141742 | || || ||| | ||| | || |||| |||||||| |||||||| | Sbjct 383 CGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAACACCG 327 Query 141743 GGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGATCA 141802 || ||| | |||||| || || |||||||| ||| || | || ||| |||| Sbjct 326 CAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCA 267 Query 141803 TTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGTGTTTG 141857 || |||||| || || ||| ||| || || || || || || || Sbjct 266 GGCG-----CGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212 Query 141858 TCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATC 141911 |||||||| || ||||| ||||| |||||||| || ||| ||||| ||||| Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATC 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568444067796480