Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq514 199 4e-46 seq606 149 6e-31 >seq514 Length=39754 Score = 199 bits (220), Expect = 4e-46 Identities = 485/732 (66%), Gaps = 2/732 (0%) Strand=Plus/Plus Query 48754 CCTAATGGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAG-ATTTTTTCC 48812 ||||| |||| | |||||| | ||| || || || |||| || | ||| | ||||| Sbjct 27249 CCTAACGGCTCAGACATATCCGAAATCACAGCCATCGTTTGACG-TCCAGCAAGCTTTCC 27307 Query 48813 AATATCAACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCATAAATGCTCC 48872 || ||||| || ||||| ||| | || || | |||||||||| || || Sbjct 27308 GATGCGTACCATAGTTTTCGCTAAACGTTTTGCATCATCGATGTTTTTCATAAAGGCACC 27367 Query 48873 ATTTCCTGTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCAT 48932 | || || | ||||| || || ||||||||||| ||| |||||||||||||||||| Sbjct 27368 TTCGCCGGTAGTCACATCCAAAACGATTGCATCTGCACCCGCTGCGATTTTTTTACTCAT 27427 Query 48933 AATGCTACTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATA 48992 || ||| ||||| || || || |||| ||||| | || ||||| |||||||| || Sbjct 27428 GATCGAACTGGCAATCAACGGGATGGAATCCACTGTCGCTGTTACATCACGTAATGCGTA 27487 Query 48993 TAATTTTTTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGCGATTTTATGTGT 49052 || || || || || || | | | |||| || || | | || | |||| | Sbjct 27488 CAACTTCTTATCCGCTGGAGCCAGATTTCCTGACTGACCGATGACAGCTACTTTACTCTT 27547 Query 49053 ATTAACTTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTC 49112 || || || || ||||| || | |||||| | |||||||| | || ||||| Sbjct 27548 GTTTACAATATCAACAAATTCTTGATCGGATAATTCGATTTTAAAGCCGGGAATTGATTC 27607 Query 49113 TAATTTGTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGG 49172 ||||| || | || ||||| || || | ||| | || |||||||| || ||||| Sbjct 27608 GAATTTATCTAAAGTACCTCCAGTAAAACCAAGACCGCGTCCAGACATTTTTGCTACAGG 27667 Query 49173 AATACCCAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACC 49232 | | | | || || | ||| |||| | ||| | | | || || || || || Sbjct 27668 TACGTCTACACTTGCTACAAGTGGCGCAAGAACCAAAGTTGTGGTGTCACCAACACCGCC 27727 Query 49233 TGTGGAATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGA 49292 |||||||| ||||| || || ||||| || || ||| | ||||| | || || || Sbjct 27728 AGTGGAATGCTTATCCACCTTCACACCCTCAATAGATGACAAATCAATGATGTCTCCTGA 27787 Query 49293 ATTAATCATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAAT 49352 || ||| || |||||| ||| ||||| || | | |||| | | || | || Sbjct 27788 GTTTGCCATAGCCAAAGTTAAATGAGAAATTTCCTCATCCGTCATGTCCTGATAAAAGAT 27847 Query 49353 TGCCATTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCGGAT 49412 ||||||||| | || ||| ||||| || ||||| |||| | || || || Sbjct 27848 TGCCATTAATAAAGCGCTCATCTGATAGTCTGGAATACTTCCGTCTGCATAGCCATCAAT 27907 Query 49413 GATAAAATCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTTCGCAATTAAATC 49472 ||| || || | |||||||||||| || | | ||| || | ||||| | || ||||| Sbjct 27908 GATGAAGTCGAGTTCTTCTTTTGATAGGGCGTTACCGTCTCTCTTTTTTTCGATCAAATC 27967 Query 49473 GACCATTCTCAT 49484 ||||||||||| Sbjct 27968 TACCATTCTCAT 27979 >seq606 Length=32730 Score = 149 bits (164), Expect = 6e-31 Identities = 126/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 5935 GGTGATAAAGTTAAATTGTTCGGATTCGGTAATTTTGAAGTTCGTGAGCGTGCAGCTCGT 5994 ||||| |||||| | ||| |||| || ||||| |||||||| ||||| ||||| || || Sbjct 23357 GGTGAAAAAGTTCAGTTGATCGGCTTTGGTAACTTTGAAGTACGTGAACGTGCGGCCCGC 23416 Query 5995 AAAGGTCGGAATCCTCAAACTGGAGAAGAAATTGAAATTCCAGCAACTAAATCCCCTGCT 6054 ||||| || || || |||||||| |||||||| ||||||||||||| ||| ||||| Sbjct 23417 AAAGGACGTAACCCACAAACTGGTGAAGAAATCGAAATTCCAGCAAGCAAAGTACCTGCA 23476 Query 6055 TTCAAACCTGCAAAAGCGTTAAAAGATGCGGTTAA 6089 |||||||| | |||||| |||||||||| ||||| Sbjct 23477 TTCAAACCAGGTAAAGCGCTAAAAGATGCAGTTAA 23511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002117270080