Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq1066 122 3e-23 >seq1066 Length=13853 Score = 122 bits (134), Expect = 3e-23 Identities = 125/163 (77%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 19231 CTGATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGTGCATGGGCGGCAAATAACTAT 19290 |||||||||||||| | ||||||||| || ||||| ||||||| ||||||||| | Sbjct 3056 CTGATGCGTGATATTCAAATGGTTCTTGAACGTTGGGGGGCATGGGTGGCAAATAATCAC 2997 Query 19291 GAGGATGTTACATGGTCGCCCATTGCTGCAGGATTTAAGGGACTGATCCCCGAAAAAGTA 19350 |||||||| |||||| | |||||||||| ||||||||| | ||||| |||||| Sbjct 2996 GAGGATGTGGAATGGTCATCTGTTGCTGCAGGTTTTAAGGGATTAATCCCTTCGAAAGTA 2937 Query 19351 AAATCACGTCCACAGTGTTG---TGACGATGACGCGATGATTA 19390 ||||| || || || ||| | |||||||| | ||| |||| Sbjct 2936 AAATCCCGCCCGCAATGTAGCGATGACGATGGCCTGATCATTA 2894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194668792134264