Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq223 102 2e-16 >seq223 Length=82600 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||||||||| || || ||||| || ||||||| |||||||| || || || || | Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || | |||||| ||||| || || || || || ||||||||||| Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896 Query 211095 GTCTTTACAAACACCTGCATT 211115 || || || || | ||||||| Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || |||||||||||||| || || |||||||| |||| ||||| ||||| || ||||| Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || |||||||| || || || || |||||||| ||||| ||||| Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || | |||||| Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| ||||| |||| |||||||| ||||| || || |||||||||||| || Sbjct 42083 CGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCACGTTTTCAATA 42142 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||| || || || || || || || || ||||| || | ||| || ||||| | Sbjct 42143 GTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTTTCACAAAAATT 42202 Query 211110 TGCATT 211115 |||||| Sbjct 42203 TGCATT 42208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159090276604940