Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq223 102 2e-16
>seq223
Length=82600
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
||||||||||| || || ||||| || ||||||| |||||||| || || || || |
Sbjct 43777 CCTGCGAAGATTAGACGCTGTTGATCCGGAGGAATGCCTTCCTTATCTTGAATTTTATTC 43836
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| ||||| || | |||||| ||||| || || || || || |||||||||||
Sbjct 43837 TTCACATTTTCAATTGAGTCAGACGGCTCAACTTCAAGCGTAATGGTTTTTCCCGTGAGC 43896
Query 211095 GTCTTTACAAACACCTGCATT 211115
|| || || || | |||||||
Sbjct 43897 GTTTTCACGAAAATCTGCATT 43917
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| |||||||||||||| || || |||||||| |||| ||||| ||||| || |||||
Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || || |||||||| || || || || |||||||| ||||| |||||
Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
| ||||| || || | ||||||
Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049
|||||||| ||||| |||| |||||||| ||||| || || |||||||||||| ||
Sbjct 42083 CGTTGTTGATCAGGTGGAATACCTTCCTTATCCTGAATTTTGGCTTTCACGTTTTCAATA 42142
Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109
||||| || || || || || || || || ||||| || | ||| || ||||| |
Sbjct 42143 GTGTCCGACGGCTCCACTTCCAGCGTTATTGTTTTTCCGGTTAAAGTTTTCACAAAAATT 42202
Query 211110 TGCATT 211115
||||||
Sbjct 42203 TGCATT 42208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159090276604940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |