Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq223 104 2e-17
>seq223
Length=82600
Score = 104 bits (114), Expect = 2e-17
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||||||||| || || |||||||| ||||| |||||||| || | |
Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432
Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| |||||||||||| | ||||||||||| | || || |||||
Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAA-TACAAGACAAAGAAGGCATTCCACCTGATCA 42373
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
||||| ||||| ||||| ||
Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352
Score = 96.9 bits (106), Expect = 2e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| ||||| |||||||||||||| || || || |||||||| | |
Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| | |||||| | || | |||||| || || ||||| | || || |||||
Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798
Query 23730 ACAGCGTTTAATATTTGCCGG 23750
||||||| |||| || || ||
Sbjct 43797 ACAGCGTCTAATCTTCGCAGG 43777
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||| || || || || || || || || ||||| || | ||
Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| |||| ||||| |||||||||||| | ||||| ||||||
Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654
Query 23731 CAGCGTTTAATATTTGCCGG 23750
||||| |||| ||||| ||
Sbjct 42653 CAGCGACTAATCTTTGCTGG 42634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337992479391248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |