Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq223 104 2e-17 >seq223 Length=82600 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| || || |||||||| ||||| |||||||| || | | Sbjct 42491 ATGCAAATATTCGTTAAAACGCTTACTGGAAAAACAATCACCCTCGAAGTGGAGCCGTCA 42432 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| |||||||||||| | ||||||||||| | || || ||||| Sbjct 42431 GACACCATTGAAAACGTTAAAACAAAAA-TACAAGACAAAGAAGGCATTCCACCTGATCA 42373 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||||| ||||| ||||| || Sbjct 42372 GCAGCGATTAATTTTTGCTGG 42352 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| |||||||||||||| || || || |||||||| | | Sbjct 43917 AATGCAGATTTTCGTGAAAACGCTCACGGGAAAAACCATTACGCTTGAAGTTGAGCCGTC 43858 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||||| | || | |||||| || || ||||| | || || ||||| Sbjct 43857 TGACTCAATTGAAAATGTGAAGAATAAAATTCAAGATAAGGAAGGCATTCCTCCGGATCA 43798 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||||||| |||| || || || Sbjct 43797 ACAGCGTCTAATCTTCGCAGG 43777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || || || || || || ||||| || | || Sbjct 42773 ATGCAGATATTCGTGAAAACTCTAACTGGCAAGACAATTACGCTGGAAGTGGAACCTTCG 42714 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| |||| ||||| |||||||||||| | ||||| |||||| Sbjct 42713 GATACTATTGAAAATGTAAAGACTAAAATACAAGACAAAGAAGGTATTCCGCCTGATCAA 42654 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| |||| ||||| || Sbjct 42653 CAGCGACTAATCTTTGCTGG 42634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337992479391248