Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq223 116 9e-21
seq2319 113 1e-19
seq2084 113 1e-19
seq2805 111 4e-19
seq1599 109 1e-18
seq2793 102 2e-16
seq679 91.5 4e-13
seq844 89.7 1e-12
seq663 89.7 1e-12
>seq223
Length=82600
Score = 116 bits (128), Expect = 9e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || ||||||||||| || || ||||| || ||||||||||| |||||||| |||||
Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| || ||||||||||| | || || || | ||||| ||||||||||||
Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035
Query 225691 AAAGTTTTTATGAACACTTGCATT 225714
|| || || | ||| | |||||||
Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||| ||||| ||||| ||||| || |||||||||||||| |||||||| || || |
Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| ||| ||| || || || || | |||||| || | ||| || |||||||| || | |
Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | |||||
Sbjct 42754 GTTTTCACGAATATCTGCAT 42773
>seq2319
Length=3243
Score = 113 bits (124), Expect = 1e-19
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794
|||||||| ||||| ||||| || |||||||||||||||||||| |||| | | |
Sbjct 1726 TTGGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATACTCCACTGCTTGTGCGGGCC 1785
Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851
|||||| || |||||||||| ||||||||||||||| | | |||||||| || |||
Sbjct 1786 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGTGGATTACTTA 1842
>seq2084
Length=3937
Score = 113 bits (124), Expect = 1e-19
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794
|||||||| ||||| ||||| || |||||||||||||||||||| |||| | | |
Sbjct 3354 TTGGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATACTCCACTGCTTGTGCGGGCC 3413
Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851
|||||| || |||||||||| ||||||||||||||| | | |||||||| || |||
Sbjct 3414 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGTGGATTACTTA 3470
>seq2805
Length=2094
Score = 111 bits (122), Expect = 4e-19
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| ||||| || |||||||||||||| |||||||||| | | |
Sbjct 1024 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATAATCCACCGCTTGTGCGGGCCC 965
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851
|||||| || |||||||||| ||||||||| ||||| | | ||||||||||| |||
Sbjct 964 CCGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGTGGAATACTTA 909
>seq1599
Length=6876
Score = 109 bits (120), Expect = 1e-18
Identities = 101/127 (80%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | |
Sbjct 2470 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 2411
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | ||
Sbjct 2410 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 2351
Query 7855 GTTAGCT 7861
|||||||
Sbjct 2350 GTTAGCT 2344
>seq2793
Length=2112
Score = 102 bits (112), Expect = 2e-16
Identities = 99/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796
|||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | |
Sbjct 880 GGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 939
Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855
||||| || |||||||||||||||||||| |||| | | |||| || ||||| |||
Sbjct 940 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCAATTTATTGCG 999
Query 7856 TTAGCT 7861
||||||
Sbjct 1000 TTAGCT 1005
>seq679
Length=28152
Score = 91.5 bits (100), Expect = 4e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| |||||||||||||| || |||||||||||| || || || |||||||| || ||
Sbjct 6259 AAGATTTGACCATCAGTTATGCTGATAACATTTGTTGGAATGTACGCAGAAACGTCTCCA 6200
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTTCAC 4590
|| ||||| || | || || | ||||| || |||||||| ||||| || | |||| ||
Sbjct 6199 GCCTGTGTCTCTATGACTGGCAGTGCTGTCAGAGATCCACCTCCAAACTTATCATTTAAC 6140
>seq844
Length=20076
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| |||||||| || ||||| ||||| ||||| ||||| || |||| ||| |||
Sbjct 15666 AAGATTTGTCCATCAGTGATTGAGATTACATTAGTAGGAATATAGGCTGAAATATCTCCT 15607
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577
||||||||||| || | || ||||| || | ||| || || || ||
Sbjct 15606 GCTTGTGTTTCTACGAATGGCAAGGCAGTCAATGAACCGCCGCCTAA 15560
>seq663
Length=29291
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| || ||||| ||||| || || ||||| | ||||||||| |||| ||||||
Sbjct 23923 GAAGATTTGTCCGTCAGTGATAGAAATCACGTTTGTTGCGATATAAGCTGAAATATCACC 23864
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576
||||||||||| | || || | ||||| | || ||||||||||
Sbjct 23863 AGCTTGTGTTTCAATAAATGGAAGAGCTGTGATAGAACCACCACCAA 23817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192467699204264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |