Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq223 116 9e-21 seq2319 113 1e-19 seq2084 113 1e-19 seq2805 111 4e-19 seq1599 109 1e-18 seq2793 102 2e-16 seq679 91.5 4e-13 seq844 89.7 1e-12 seq663 89.7 1e-12 >seq223 Length=82600 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct 42916 TTACCTGCGAAGATAAGACGCTGCTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTA 42975 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || ||||||||||| | || || || | ||||| |||||||||||| Sbjct 42976 GTCTTAACATTCTCAATGGTGTCTGACGGCTCTACTTCAAGAGTGATAGTCTTGCCCGTC 43035 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 || || || | ||| | ||||||| Sbjct 43036 AATGTCTTGACGAAAATTTGCATT 43059 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| ||||| ||||| ||||| || |||||||||||||| |||||||| || || | Sbjct 42634 CCAGCAAAGATTAGTCGCTGTTGATCAGGCGGAATACCTTCTTTGTCTTGTATTTTAGTC 42693 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| || || || || | |||||| || | ||| || |||||||| || | | Sbjct 42694 TTTACATTTTCAATAGTATCCGAAGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTTAGA 42753 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 42754 GTTTTCACGAATATCTGCAT 42773 >seq2319 Length=3243 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| ||||| || |||||||||||||||||||| |||| | | | Sbjct 1726 TTGGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATACTCCACTGCTTGTGCGGGCC 1785 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 |||||| || |||||||||| ||||||||||||||| | | |||||||| || ||| Sbjct 1786 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGTGGATTACTTA 1842 >seq2084 Length=3937 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| ||||| || |||||||||||||||||||| |||| | | | Sbjct 3354 TTGGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATACTCCACTGCTTGTGCGGGCC 3413 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 |||||| || |||||||||| ||||||||||||||| | | |||||||| || ||| Sbjct 3414 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGTGGATTACTTA 3470 >seq2805 Length=2094 Score = 111 bits (122), Expect = 4e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || |||||||||||||| |||||||||| | | | Sbjct 1024 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATAATCCACCGCTTGTGCGGGCCC 965 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA 7851 |||||| || |||||||||| ||||||||| ||||| | | ||||||||||| ||| Sbjct 964 CCGTCAATTCCTTTGAGTTTCAACCTTGCGATCGTACTCCCCAGGTGGAATACTTA 909 >seq1599 Length=6876 Score = 109 bits (120), Expect = 1e-18 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 2470 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 2411 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| ||||||||||||||| | | |||| ||| | || | || Sbjct 2410 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGC 2351 Query 7855 GTTAGCT 7861 ||||||| Sbjct 2350 GTTAGCT 2344 >seq2793 Length=2112 Score = 102 bits (112), Expect = 2e-16 Identities = 99/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | | Sbjct 880 GGTAAGGTTCTTCGCGTTGCGTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCC 939 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCG 7855 ||||| || |||||||||||||||||||| |||| | | |||| || ||||| ||| Sbjct 940 CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCAATTTATTGCG 999 Query 7856 TTAGCT 7861 |||||| Sbjct 1000 TTAGCT 1005 >seq679 Length=28152 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||||||||| || |||||||||||| || || || |||||||| || || Sbjct 6259 AAGATTTGACCATCAGTTATGCTGATAACATTTGTTGGAATGTACGCAGAAACGTCTCCA 6200 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTTCAC 4590 || ||||| || | || || | ||||| || |||||||| ||||| || | |||| || Sbjct 6199 GCCTGTGTCTCTATGACTGGCAGTGCTGTCAGAGATCCACCTCCAAACTTATCATTTAAC 6140 >seq844 Length=20076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||| || ||||| ||||| ||||| ||||| || |||| ||| ||| Sbjct 15666 AAGATTTGTCCATCAGTGATTGAGATTACATTAGTAGGAATATAGGCTGAAATATCTCCT 15607 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||||||||| || | || ||||| || | ||| || || || || Sbjct 15606 GCTTGTGTTTCTACGAATGGCAAGGCAGTCAATGAACCGCCGCCTAA 15560 >seq663 Length=29291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || ||||| ||||| || || ||||| | ||||||||| |||| |||||| Sbjct 23923 GAAGATTTGTCCGTCAGTGATAGAAATCACGTTTGTTGCGATATAAGCTGAAATATCACC 23864 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||||||||| | || || | ||||| | || |||||||||| Sbjct 23863 AGCTTGTGTTTCAATAAATGGAAGAGCTGTGATAGAACCACCACCAA 23817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192467699204264