Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq18 150 2e-31
>seq18
Length=263653
Score = 150 bits (166), Expect = 2e-31
Identities = 470/730 (64%), Gaps = 56/730 (8%)
Strand=Plus/Minus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|||||||||||| || |||| |||||||| || || ||||| | ||| || ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376
|||||||| || |||||||| || ||||| || || || | | | || | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436
|| || || || || ||||||| || |||| ||| ||| |||| || || || || |
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496
| ||||| || || | || | |||||||| || || | || || ||| || ||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
Query 4497 TCTTTTATTTTATCTTTAGATGGT-TTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555
| | || ||||||| |||| || | | |||| ||| || ||||| |||||
Sbjct 150461 TGCTCGATGCGATCTTTAC-TGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAA 150403
Query 4556 ATCACAATGCAAACCTT----------------CGT---------CTCTGC-TAAT---C 4586
|||||| |||| ||| | | | | | || |||| |
Sbjct 150402 ATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGC 150343
Query 4587 AGT--------TCGTTAGA-------------AAACGTTAATCCGGGCATTAAACCTCTC 4625
||| ||| ||| ||| || | || ||||| | ||| |
Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283
Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685
|| || ||||| || || | ||||| |||||||||||||| || || |||||||||
Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223
Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTTTAATCCATTTTAATGCCC 4743
|| ||||| | ||| | ||| | || |||| ||| |||||| || ||||
Sbjct 150222 AATGCTACAAGTCGATCTCTGAATGG--TGACTTTTTGTCCGCTATCCATCGTAGAGCCC 150165
Query 4744 AGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTT 4803
| | || || ||||||||||| ||||| || | || ||||| || | | ||
Sbjct 150164 AATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTT 150105
Query 4804 CAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863
| | ||||||||||| ||||| || || || |||||||| || || || ||||| |
Sbjct 150104 CCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045
Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923
|||||||||| || || ||||||||||| | ||| ||||| || |||| ||| | |||
Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985
Query 4924 ATCTTTCTAC 4933
| | ||| ||
Sbjct 149984 AGCGTTCAAC 149975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427027969403948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |