Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 >seq18 Length=263653 Score = 150 bits (166), Expect = 2e-31 Identities = 470/730 (64%), Gaps = 56/730 (8%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||||||| || |||| |||||||| || || ||||| | ||| || || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||| || |||||||| || ||||| || || || | | | || | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || || || || || ||||||| || |||| ||| ||| |||| || || || || | Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | ||||| || || | || | |||||||| || || | || || ||| || || Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 4497 TCTTTTATTTTATCTTTAGATGGT-TTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | | || ||||||| |||| || | | |||| ||| || ||||| ||||| Sbjct 150461 TGCTCGATGCGATCTTTAC-TGGTCTTGTGTTTCAAGTGAGAAAATAACAAACATGCAAA 150403 Query 4556 ATCACAATGCAAACCTT----------------CGT---------CTCTGC-TAAT---C 4586 |||||| |||| ||| | | | | | || |||| | Sbjct 150402 ATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAATGAGC 150343 Query 4587 AGT--------TCGTTAGA-------------AAACGTTAATCCGGGCATTAAACCTCTC 4625 ||| ||| ||| ||| || | || ||||| | ||| | Sbjct 150342 AGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACCACGT 150283 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || ||||| || || | ||||| |||||||||||||| || || ||||||||| Sbjct 150282 TTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGCGGCA 150223 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTTTAATCCATTTTAATGCCC 4743 || ||||| | ||| | ||| | || |||| ||| |||||| || |||| Sbjct 150222 AATGCTACAAGTCGATCTCTGAATGG--TGACTTTTTGTCCGCTATCCATCGTAGAGCCC 150165 Query 4744 AGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTT 4803 | | || || ||||||||||| ||||| || | || ||||| || | | || Sbjct 150164 AATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGCGTT 150105 Query 4804 CAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTT 4863 | | ||||||||||| ||||| || || || |||||||| || || || ||||| | Sbjct 150104 CCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAATATTCT 150045 Query 4864 CTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAA 4923 |||||||||| || || ||||||||||| | ||| ||||| || |||| ||| | ||| Sbjct 150044 CTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCGAGAAA 149985 Query 4924 ATCTTTCTAC 4933 | | ||| || Sbjct 149984 AGCGTTCAAC 149975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427027969403948