Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_030953.1
Length=170650
Score E
Sequences producing significant alignments: (Bits) Value
seq732 98.7 1e-15
>seq732
Length=24842
Score = 98.7 bits (108), Expect = 1e-15
Identities = 304/463 (66%), Gaps = 22/463 (5%)
Strand=Plus/Minus
Query 160380 GCAATACGAGGAAGATTCAGTGTTACAACGCCAAGATTATTACGTCCATCAAGAATTTCA 160439
|||||||| || || ||||| | | ||||| || || ||||| ||||| | || |
Sbjct 603 GCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGC 544
Query 160440 TTACCAGTCGAATCTTTCCATACGCCCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 160499
| || | || || ||| ||||| | ||| || ||||| ||||| || | | |
Sbjct 543 TCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA--A 486
Query 160500 ACAGATGAACCAGTGA-TAGCTTTAT-TGTTCTTAGCTGAAATAATATCAGGATACATCC 160557
|| ||||| |||| | | || || || ||| | | ||||| |||||||| |
Sbjct 485 AC----GAACCGGTGACTTTCACTACCTGATCGTAGTTCAGG--ATATCCGGATACATGC 432
Query 160558 TTTTGCTTGCGCACTCTAAAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 160617
|||||||||||||| | || ||||| || || || |||||||||||| |||| | |
Sbjct 431 GCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTAT 372
Query 160618 GATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCAT 160674
| || | ||| || || ||||| || || || ||||| | | |||| | | |
Sbjct 371 GGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAACACCGCAGTTTTACGGT 315
Query 160675 CACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG---TTCAG 160731
||| || ||| ||||| || ||| || | || |||||||| || |||
Sbjct 314 TTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTC-- 257
Query 160732 TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTAA 160791
|||| || ||| |||||| || |||||||| || ||||| ||||| | |
Sbjct 256 -CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTGT 198
Query 160792 AGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 160834
|| || |||||||| || || | ||||| ||||||||
Sbjct 197 GCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545923637793600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |