Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq732 98.7 1e-15 >seq732 Length=24842 Score = 98.7 bits (108), Expect = 1e-15 Identities = 304/463 (66%), Gaps = 22/463 (5%) Strand=Plus/Minus Query 160380 GCAATACGAGGAAGATTCAGTGTTACAACGCCAAGATTATTACGTCCATCAAGAATTTCA 160439 |||||||| || || ||||| | | ||||| || || ||||| ||||| | || | Sbjct 603 GCAATACGCGGCAGGTTCAGGCTGATCACGCCGAGGTTGTTACGACCATCGTGGATCTGC 544 Query 160440 TTACCAGTCGAATCTTTCCATACGCCCAAGAAACTACGGCAACCCATTGGAGAAACAGGA 160499 | || | || || ||| ||||| | ||| || ||||| ||||| || | | | Sbjct 543 TCGCCGTTTTCATTTTCCCACACGCCGAGGAAGCTGCGGCAGCCCATCGGGGTTTTA--A 486 Query 160500 ACAGATGAACCAGTGA-TAGCTTTAT-TGTTCTTAGCTGAAATAATATCAGGATACATCC 160557 || ||||| |||| | | || || || ||| | | ||||| |||||||| | Sbjct 485 AC----GAACCGGTGACTTTCACTACCTGATCGTAGTTCAGG--ATATCCGGATACATGC 432 Query 160558 TTTTGCTTGCGCACTCTAAAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTATAAA 160617 |||||||||||||| | || ||||| || || || |||||||||||| |||| | | Sbjct 431 GCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGATCGCCTTTTTTAT 372 Query 160618 GATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAAATAGGAGTTATCCCAT 160674 | || | ||| || || ||||| || || || ||||| | | |||| | | | Sbjct 371 GGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAACACCGCAGTTTTACGGT 315 Query 160675 CACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATCATTCG---TTCAG 160731 ||| || ||| ||||| || ||| || | || |||||||| || ||| Sbjct 314 TTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAATCAGGCGCGATTC-- 257 Query 160732 TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTCCGTTTGAACTAA 160791 |||| || ||| |||||| || |||||||| || ||||| ||||| | | Sbjct 256 -CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTGACCGTTGGCGGTGT 198 Query 160792 AGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 160834 || || |||||||| || || | ||||| |||||||| Sbjct 197 GCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545923637793600