Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq732 86.0 7e-12 >seq732 Length=24842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/299 (67%), Gaps = 12/299 (4%) Strand=Plus/Minus Query 108452 ATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 108511 ||||| |||||||| | |||||||| ||||| || || ||||| || || || |||||| Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388 Query 108512 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAA 108568 |||||| |||| | | | || | ||| || || ||||| || || || ||||| Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAAC 331 Query 108569 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 108628 | | |||| | | | ||| || ||| ||||| || ||| || | || |||| Sbjct 330 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGA 271 Query 108629 ATCATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTC 108685 |||| || ||| |||| || || |||||| || |||||||| || ||| Sbjct 270 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 214 Query 108686 TGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 108744 || ||||| | | || || |||||||| || || | ||||| |||||||| Sbjct 213 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540621513253280