Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031023.1
Length=32649
Score E
Sequences producing significant alignments: (Bits) Value
seq729 113 9e-21
>seq729
Length=25020
Score = 113 bits (124), Expect = 9e-21
Identities = 221/324 (68%), Gaps = 2/324 (1%)
Strand=Plus/Minus
Query 26879 AATAACGTCGTATTGGTTGGACGCTTAACTAAAGAACCAGAATTAAAACACACCGGAAAT 26938
||||| || ||| | ||||| || ||||| || || || || ||| |||||| ||||
Sbjct 1319 AATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAAT 1260
Query 26939 AATATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAAGACGCTAA-CGG 26997
|| | || || | || | | || || || ||||| |||| || | || |||
Sbjct 1259 GGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTAC-GAATCAAAGCGG 1201
Query 26998 AGAGCGTGAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTGGC 27057
| || || | || ||||| || ||||| |||||||| || || |||| ||| ||
Sbjct 1200 GAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGC 1141
Query 27058 TAATTGGGCTAAAAAAGGCGCATTAATTGGAATCACTGGACGTATTCAGACTCGTAGCTA 27117
||||| || ||||| | | | || | ||||| ||||| || || | | ||
Sbjct 1140 TAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTA 1081
Query 27118 TGAAAATCAACAGGGGCAACGAGTGTATGTGACAGAGGTAGTCGCTGAAAATTTTCAAAT 27177
||||||||| || |||||||| || ||||||||||| || || ||||| ||||| ||| |
Sbjct 1080 TGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATT 1021
Query 27178 GCTAGAAAGTCGTGCAGCGCGTGA 27201
| ||| |||| | || ||||
Sbjct 1020 ATTGGAATCTCGTACTGCAAGTGA 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104350049809992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |