Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031023.1 Length=32649 Score E Sequences producing significant alignments: (Bits) Value seq729 113 9e-21 >seq729 Length=25020 Score = 113 bits (124), Expect = 9e-21 Identities = 221/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 26879 AATAACGTCGTATTGGTTGGACGCTTAACTAAAGAACCAGAATTAAAACACACCGGAAAT 26938 ||||| || ||| | ||||| || ||||| || || || || ||| |||||| |||| Sbjct 1319 AATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAAT 1260 Query 26939 AATATCGCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAAGACGCTAA-CGG 26997 || | || || | || | | || || || ||||| |||| || | || ||| Sbjct 1259 GGTACAGGTGTTGCCACGTTTACTTTAGCTGTGAATCGTAATTTTAC-GAATCAAAGCGG 1201 Query 26998 AGAGCGTGAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTGGC 27057 | || || | || ||||| || ||||| |||||||| || || |||| ||| || Sbjct 1200 GAATCGCGAGGCGGATTTTATCAATTGTGTAATTTGGCGGAAATCAGCAGAAACTTTAGC 1141 Query 27058 TAATTGGGCTAAAAAAGGCGCATTAATTGGAATCACTGGACGTATTCAGACTCGTAGCTA 27117 ||||| || ||||| | | | || | ||||| ||||| || || | | || Sbjct 1140 TAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGAAATTA 1081 Query 27118 TGAAAATCAACAGGGGCAACGAGTGTATGTGACAGAGGTAGTCGCTGAAAATTTTCAAAT 27177 ||||||||| || |||||||| || ||||||||||| || || ||||| ||||| ||| | Sbjct 1080 TGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATT 1021 Query 27178 GCTAGAAAGTCGTGCAGCGCGTGA 27201 | ||| |||| | || |||| Sbjct 1020 ATTGGAATCTCGTACTGCAAGTGA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104350049809992