Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031030.1
Length=170788
Score E
Sequences producing significant alignments: (Bits) Value
seq732 86.0 7e-12
>seq732
Length=24842
Score = 86.0 bits (94), Expect = 7e-12
Identities = 200/299 (67%), Gaps = 12/299 (4%)
Strand=Plus/Minus
Query 41497 ATGTCAGGATACATTCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTC 41556
|| || |||||||| | |||||||||||||| || || |||||||| || || ||||||
Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388
Query 41557 GGATCGTTTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGAAAA 41613
|||||| ||| | | | || | ||| || || ||||| || || || || ||
Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAAC 331
Query 41614 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 41673
| | |||| | | | ||| || ||| ||||| || ||| || | || ||||
Sbjct 330 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGA 271
Query 41674 ATCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTT 41730
|||| || ||| |||| || ||| |||||| || |||||||| |||||
Sbjct 270 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 214
Query 41731 TGCCCGTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 41789
|| ||||| | | || || |||||||| || || | ||||| ||||||||
Sbjct 213 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546365214852480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |