Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq18 168 9e-37
seq63 93.3 6e-14
>seq18
Length=263653
Score = 168 bits (186), Expect = 9e-37
Identities = 477/736 (65%), Gaps = 69/736 (9%)
Strand=Plus/Minus
Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909
||||| ||||| ||||| | | || || ||||| || || ||||| | ||||| ||
Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642
Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969
|||||||| || || ||||| | ||||| || || || | | | || || | |
Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582
Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029
| | ||| || ||| ||||||| ||| ||||| | | |||||||| || || ||
Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522
Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089
|| || || || ||||| ||||| |||||||| || || | ||| || || ||| |||
Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462
Query 48090 -----GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144
|||| | | || | |||| || | ||| || ||| | |||||||
Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTG-TGTTT----CAAGTGAGAAAATAACAAACATG 150407
Query 48145 CAAAATCACAATGAAGACCTTCAT-------------CTCTACTAATT---------AAT 48182
|||||||||| || ||||| | | || || |||| |||
Sbjct 150406 CAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAAT 150347
Query 48183 ---------------TCGTTAGA-------------AAATGTGAGACCGGGCATTAGTCC 48214
||| ||| ||| ||||| || ||||| || ||
Sbjct 150346 GAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACC 150287
Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274
|||||| || ||||| || || | || || ||||||||||||||| || || |||||
Sbjct 150286 ACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGC 150227
Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGTTGT---GTATCCACCGTTGTG 48330
|||||||| ||||| |||| | | || ||| |||| |||||| ||| | |
Sbjct 150226 GGCAAATGCTACAAGTCGATCTCTGAATGGTGACTT-TTTGTCCGCTATCCATCGTAGAG 150168
Query 48331 CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttt 48390
||||||| ||||||||||| || || || || || || || || || || || ||
Sbjct 150167 CCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGC 150108
Query 48391 tttCATTGCT--ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448
||| ||| ||||| || || || || || | ||||||||||| || ||||||||
Sbjct 150107 GTTC--CGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAAT 150050
Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508
||| || || || || || || |||||||| || | || ||||| | ||| | |||
Sbjct 150049 ATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCG 149990
Query 48509 ACAAAATCGTTCAGCC 48524
| |||| |||||| ||
Sbjct 149989 AGAAAAGCGTTCAACC 149974
>seq63
Length=178715
Score = 93.3 bits (102), Expect = 6e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|| || | ||| |||||||| ||||| | || |||| ||||| |||||||||||| ||
Sbjct 171363 TCGAACTGATCACCCCAAACTTCATCAAGGCCGGGGCTTTCATGTGGGCACATCAAACAC 171304
Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044
|| ||||||||| | | || || ||| || | || |||||||| || || ||
Sbjct 171303 CAATCACCATCTGCTTCAATACGCCGCATGAATAAGTCTGGTATCCAAAGCGCGTAGAAC 171244
Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104
| ||||| | | | ||| || || || || ||| | || | || || || | |
Sbjct 171243 AAATCTCTAGCACGGTTTTCGTCTTTGCCCGTGTTCCTCTTCGCGTGCAGGAAGTCAAAA 171184
Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150
||||| | |||||||||||| | ||||| || | | |||||||
Sbjct 171183 ATATCTGCATGCCATGGTTCCAAGTATATAGCAAACGCGCCAGGTC 171138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 78236 TCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTC 78291
||||| |||||| || || | || |||||| |||||| | ||| |||||||
Sbjct 170948 TCCAGCAATATAGCTCCCGGTGGCTCGAATAG----AATGGACGTTGAGCCCAATTCCTC 170893
Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351
| || | || || || | ||||| ||| | ||||||||||| ||||| || ||||
Sbjct 170892 CGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGT 170833
Query 78352 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411
| || |||| | || ||||| || ||| || || | | |||||| | ||||
Sbjct 170832 CCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAA 170773
Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463
| | || || || || || |||||||||||||| || | ||| || |||||
Sbjct 170772 AAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGT 170721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694632711955840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |