Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18 168 9e-37 seq63 93.3 6e-14 >seq18 Length=263653 Score = 168 bits (186), Expect = 9e-37 Identities = 477/736 (65%), Gaps = 69/736 (9%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||| ||||| ||||| | | || || ||||| || || ||||| | ||||| || Sbjct 150701 TTTTGGTATTCGCCCACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCATT 150642 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 |||||||| || || ||||| | ||||| || || || | | | || || | | Sbjct 150641 TCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCAAC 150582 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | | ||| || ||| ||||||| ||| ||||| | | |||||||| || || || Sbjct 150581 AAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCAGG 150522 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || || || || ||||| ||||| |||||||| || || | ||| || || ||| ||| Sbjct 150521 TTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGATC 150462 Query 48090 -----GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 |||| | | || | |||| || | ||| || ||| | ||||||| Sbjct 150461 TGCTCGATGCGATCTTTACTGGTCTTG-TGTTT----CAAGTGAGAAAATAACAAACATG 150407 Query 48145 CAAAATCACAATGAAGACCTTCAT-------------CTCTACTAATT---------AAT 48182 |||||||||| || ||||| | | || || |||| ||| Sbjct 150406 CAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCTAAT 150347 Query 48183 ---------------TCGTTAGA-------------AAATGTGAGACCGGGCATTAGTCC 48214 ||| ||| ||| ||||| || ||||| || || Sbjct 150346 GAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAGACC 150287 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 |||||| || ||||| || || | || || ||||||||||||||| || || ||||| Sbjct 150286 ACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGACGGC 150227 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTA-ACTGGCTTCGTTGT---GTATCCACCGTTGTG 48330 |||||||| ||||| |||| | | || ||| |||| |||||| ||| | | Sbjct 150226 GGCAAATGCTACAAGTCGATCTCTGAATGGTGACTT-TTTGTCCGCTATCCATCGTAGAG 150168 Query 48331 CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttt 48390 ||||||| ||||||||||| || || || || || || || || || || || || Sbjct 150167 CCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGGTGGC 150108 Query 48391 tttCATTGCT--ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 ||| ||| ||||| || || || || || | ||||||||||| || |||||||| Sbjct 150107 GTTC--CGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGAAT 150050 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 ||| || || || || || || |||||||| || | || ||||| | ||| | ||| Sbjct 150049 ATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCCG 149990 Query 48509 ACAAAATCGTTCAGCC 48524 | |||| |||||| || Sbjct 149989 AGAAAAGCGTTCAACC 149974 >seq63 Length=178715 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || | ||| |||||||| ||||| | || |||| ||||| |||||||||||| || Sbjct 171363 TCGAACTGATCACCCCAAACTTCATCAAGGCCGGGGCTTTCATGTGGGCACATCAAACAC 171304 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || ||||||||| | | || || ||| || | || |||||||| || || || Sbjct 171303 CAATCACCATCTGCTTCAATACGCCGCATGAATAAGTCTGGTATCCAAAGCGCGTAGAAC 171244 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||||| | | | ||| || || || || ||| | || | || || || | | Sbjct 171243 AAATCTCTAGCACGGTTTTCGTCTTTGCCCGTGTTCCTCTTCGCGTGCAGGAAGTCAAAA 171184 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||||| | |||||||||||| | ||||| || | | ||||||| Sbjct 171183 ATATCTGCATGCCATGGTTCCAAGTATATAGCAAACGCGCCAGGTC 171138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 78236 TCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTC 78291 ||||| |||||| || || | || |||||| |||||| | ||| ||||||| Sbjct 170948 TCCAGCAATATAGCTCCCGGTGGCTCGAATAG----AATGGACGTTGAGCCCAATTCCTC 170893 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 | || | || || || | ||||| ||| | ||||||||||| ||||| || |||| Sbjct 170892 CGGCATTTTTTGAAATAATCGCGCATTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGT 170833 Query 78352 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411 | || |||| | || ||||| || ||| || || | | |||||| | |||| Sbjct 170832 CCGCCTTCATTGTGAGCAGAAAGCAACTACTCAACTGTGGCTTGCAAGTTCCAGAGTTAA 170773 Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 | | || || || || || |||||||||||||| || | ||| || ||||| Sbjct 170772 AAAGGGTAGGCGAAGCGTGGGTAAACCATTTTTCTGACATTAGGTTATATGT 170721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694632711955840