Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq18 156 6e-33
>seq18
Length=263653
Score = 156 bits (172), Expect = 6e-33
Identities = 473/735 (64%), Gaps = 73/735 (10%)
Strand=Plus/Minus
Query 46339 TTTTGGTATTCACCTACACGTTTCT--CGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396
||||||||||| || ||| ||||| | || ||||| || || ||||| | |||||
Sbjct 150701 TTTTGGTATTCGCC--CACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCA 150644
Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456
|||||||||| || |||||||| | |||| || || || | | | || || |
Sbjct 150643 TTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCA 150584
Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516
|| | ||| || ||| ||||||| || ||||| | | |||||||| || || |
Sbjct 150583 ACAAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCA 150524
Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576
| ||||| || || ||||| ||||| |||||||| ||||| | ||| || || ||| |
Sbjct 150523 GGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGA 150464
Query 46577 TC-----GATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAAC 46630
|| |||| | | ||| || |||| || |||| || ||| | ||||
Sbjct 150463 TCTGCTCGATGCGA-TCTTTACTGGTCTTG-----TGTTTCAAGTGAGAAAATAACAAAC 150410
Query 46631 ATGCAAAATCACAATGAAGGCCTTCAT-------------CTCTACTAATT--------- 46668
||||||||||||| || || || | | || || ||||
Sbjct 150409 ATGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCT 150350
Query 46669 AAT---------------TCGTTAGA-------------AAATGTGAGCCCAGGCATTAG 46700
||| ||| ||| ||| |||||||| ||||| ||
Sbjct 150349 AATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAG 150290
Query 46701 TCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760
||||| || || ||||| || || | || || ||||||||||||||| || || ||
Sbjct 150289 ACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGAC 150230
Query 46761 AGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTT 46815
|| || ||||| ||||||| |||| | | ||| | || || ||||| | |
Sbjct 150229 GGCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGT 150172
Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875
|||||||||| ||||| ||||| || || || || || || || || || || || |
Sbjct 150171 AGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGG 150112
Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935
| ||| | ||||| || ||| || || || | ||||||||||| || || |||
Sbjct 150111 TGGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGA 150052
Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || ||||| || || || |||||||| || | || || || | ||| | ||
Sbjct 150051 ATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCC 149992
Query 46996 GTACAAAATCGTTCA 47010
| |||| ||||||
Sbjct 149991 CGAGAAAAGCGTTCA 149977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712897363057920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |