Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq18 156 6e-33 >seq18 Length=263653 Score = 156 bits (172), Expect = 6e-33 Identities = 473/735 (64%), Gaps = 73/735 (10%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCT--CGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||||||||||| || ||| ||||| | || ||||| || || ||||| | ||||| Sbjct 150701 TTTTGGTATTCGCC--CACCTTTCTTTCAAAGAAATTGGTCTTACCTTCAAGCGATATCA 150644 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 |||||||||| || |||||||| | |||| || || || | | | || || | Sbjct 150643 TTTCCATAAAGTCGAACGGATTCTCAGCATTGTATATCTTGTCGCAGTCCAACTCAACCA 150584 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || | ||| || ||| ||||||| || ||||| | | |||||||| || || | Sbjct 150583 ACAAACGATCGGCCACGTATTCTATGTATTGGCACATCAGTACGCAATTCATGCCGATCA 150524 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 | ||||| || || ||||| ||||| |||||||| ||||| | ||| || || ||| | Sbjct 150523 GGTTGACAGGAAGTGCCTCGGTAAGGAACTCTTGCTCAATGGCGACCGCCTCTCGTATGA 150464 Query 46577 TC-----GATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAAC 46630 || |||| | | ||| || |||| || |||| || ||| | |||| Sbjct 150463 TCTGCTCGATGCGA-TCTTTACTGGTCTTG-----TGTTTCAAGTGAGAAAATAACAAAC 150410 Query 46631 ATGCAAAATCACAATGAAGGCCTTCAT-------------CTCTACTAATT--------- 46668 ||||||||||||| || || || | | || || |||| Sbjct 150409 ATGCAAAATCACAGTGCAGACCCTAAAATGAATGCGAAAACTTTAAAAATTGCACAGCCT 150350 Query 46669 AAT---------------TCGTTAGA-------------AAATGTGAGCCCAGGCATTAG 46700 ||| ||| ||| ||| |||||||| ||||| || Sbjct 150349 AATGAGCAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGCCCTGGCATGAG 150290 Query 46701 TCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760 ||||| || || ||||| || || | || || ||||||||||||||| || || || Sbjct 150289 ACCACGTTTCTTTAGCCAGAAAATCGAAGCAAAGCTTCCAGAAAAGAATATACCCTCGAC 150230 Query 46761 AGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG-----AATCCACCTT 46815 || || ||||| ||||||| |||| | | ||| | || || ||||| | | Sbjct 150229 GGCGGCAAATGCTACAAGTCGATCTC--TGAATGGTGACTTTTTGTCCGCTATCCATCGT 150172 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||||| ||||| ||||| || || || || || || || || || || || | Sbjct 150171 AGAGCCCAATCGGCCTTCTTCTTAACGCATGGAATGGTCTCAATGGCGTTGAACAGGTGG 150112 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | ||| | ||||| || ||| || || || | ||||||||||| || || ||| Sbjct 150111 TGGCGTTCCGCTTCATCTTGAATATACGTGTCAATCAGCAGACTATACATCTCCGAGTGA 150052 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 || || || ||||| || || || |||||||| || | || || || | ||| | || Sbjct 150051 ATATTCTCTATAGCAATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCC 149992 Query 46996 GTACAAAATCGTTCA 47010 | |||| |||||| Sbjct 149991 CGAGAAAAGCGTTCA 149977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712897363057920