Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031047.1
Length=170770
Score E
Sequences producing significant alignments: (Bits) Value
seq732 91.5 2e-13
>seq732
Length=24842
Score = 91.5 bits (100), Expect = 2e-13
Identities = 185/272 (68%), Gaps = 12/272 (4%)
Strand=Plus/Plus
Query 78762 GAAGTAAATACACTTTTCAGCTCTAATGGACAGACTCCTTTTGTAACAATTACATTTGGT 78821
|||||||| || || || | | || || ||||| || |||||||| || ||||||
Sbjct 182 GAAGTAAACACCCTGCACACCGCCAACGGTCAGACGCCGTTTGTAACCTTTGGTTTTGGT 241
Query 78822 ACGGGAACTGACTGGACTGAA---CGAATGATTCAGAAAGCAATTCTGAAAAATCGTATT 78878
||| || |||| ||| || |||||||| || | || ||| || |||||
Sbjct 242 CTGGGCACCAGCTGG---GAATCGCGCCTGATTCAGGAATCTATCCTGCGTAACCGTATC 298
Query 78879 AAAGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGTTATGTTTG---TT 78935
||| || ||| | | | |||| | | ||||| || || || ||||| ||
Sbjct 299 GCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCCGAAACTGGT---GTTTGCGATT 355
Query 78936 GAAGAAGGTGTTAATCTTTACAAAGACGATCCGAACTATGATATTAAGCAGCTTGCTCTA 78995
|| ||| | || | | | |||| |||||||||||| || || || ||||| || ||
Sbjct 356 CGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGACATCAAACAGCTGGCGCTG 415
Query 78996 GAGTGCGCAAGCAAAAGAATGTATCCTGATAT 79027
|||||||||||||| | |||||||| |||||
Sbjct 416 GAGTGCGCAAGCAAGCGCATGTATCCGGATAT 447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546307617844800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |