Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq732 91.5 2e-13 >seq732 Length=24842 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/272 (68%), Gaps = 12/272 (4%) Strand=Plus/Plus Query 78762 GAAGTAAATACACTTTTCAGCTCTAATGGACAGACTCCTTTTGTAACAATTACATTTGGT 78821 |||||||| || || || | | || || ||||| || |||||||| || |||||| Sbjct 182 GAAGTAAACACCCTGCACACCGCCAACGGTCAGACGCCGTTTGTAACCTTTGGTTTTGGT 241 Query 78822 ACGGGAACTGACTGGACTGAA---CGAATGATTCAGAAAGCAATTCTGAAAAATCGTATT 78878 ||| || |||| ||| || |||||||| || | || ||| || ||||| Sbjct 242 CTGGGCACCAGCTGG---GAATCGCGCCTGATTCAGGAATCTATCCTGCGTAACCGTATC 298 Query 78879 AAAGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGTTATGTTTG---TT 78935 ||| || ||| | | | |||| | | ||||| || || || ||||| || Sbjct 299 GCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCCGAAACTGGT---GTTTGCGATT 355 Query 78936 GAAGAAGGTGTTAATCTTTACAAAGACGATCCGAACTATGATATTAAGCAGCTTGCTCTA 78995 || ||| | || | | | |||| |||||||||||| || || || ||||| || || Sbjct 356 CGCGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGACATCAAACAGCTGGCGCTG 415 Query 78996 GAGTGCGCAAGCAAAAGAATGTATCCTGATAT 79027 |||||||||||||| | |||||||| ||||| Sbjct 416 GAGTGCGCAAGCAAGCGCATGTATCCGGATAT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546307617844800