Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq732 152 6e-32 >seq732 Length=24842 Score = 152 bits (168), Expect = 6e-32 Identities = 460/714 (64%), Gaps = 41/714 (6%) Strand=Plus/Plus Query 156284 GATGCTTTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACA 156343 ||||| ||||| ||| || |||||||| ||||| ||||| || |||||||| || || Sbjct 158 GATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGACG 217 Query 156344 CCTTTCGTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCC 156398 || || || || || ||| ||| || || |||||| || |||| | Sbjct 218 CCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCG-----CGCCTGATTC 272 Query 156399 AGAAAGCGATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGT 156458 || || | || ||| |||||||| || || |||||| | ||| || | |||| Sbjct 273 AGGAATCTATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 332 Query 156459 TCCCTAAACTGGTCATGTTT---ATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTA 156515 |||| |||||||| |||| || | ||| | ||| || || |||| | Sbjct 333 TCCCGAAACTGGT---GTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGA 389 Query 156516 ACTATGACATCAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATATCA 156575 |||| ||||||||||| |||| ||||| ||||| || || ||||| || |||||| Sbjct 390 ACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATCC 449 Query 156576 TTA-----GTTCGGCTAATAACCGCCTTATCACTGGTTCTAGCGTTCCTGTATCTCCTAT 156630 | | | || | || | | | |||| |||| |||| | | | || || Sbjct 450 TGAACTACGATCAGGTAGTGAAAG-----TCACCGGTT----CGTT--TAAAACCCCGAT 498 Query 156631 GGGTTGTCGCAGTTTCCTTAGTGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGG 156690 ||| || ||||| ||||| | |||||| | |||| ||||| | | || | ||||| Sbjct 499 GGGCTGCCGCAGCTTCCTCGGCGTGTGGGAAAATGAAAACGGCGAGCAGATCCACGATGG 558 Query 156691 ACGTAATAACTTGGGTGTGGTGACAATTAACCTCCCGCGTATTGCTCTTGAAGCACANNN 156750 ||||| ||| | || ||| | | | ||||| |||||||||||||| |||||| | Sbjct 559 TCGTAACAACCTCGGCGTGATCAGCCTGAACCTGCCGCGTATTGCTCTGGAAGCAAA--- 615 Query 156751 NNNNNNNNNNNNNNNNNNNNCTTTTTGGCGTATCCTTGATGACCGTCTGGGTTTGTGCTT 156810 | || ||| | || ||||| ||||||| || Sbjct 616 ------AGGCGATGAAGCCACCTTCTGGAAGCTGCTGGATGAACGTCTGGTGCTGGCACG 669 Query 156811 TGAAGCCCTGATGACTCGAATTGATAGCCTACGTGGTGTTAAAGCCAGCGTTGCGCCTAT 156870 | | || |||||||| || || | | | || || || ||||| |||| || || || Sbjct 670 TAAGGCGCTGATGACCCGTATCGCTCGTCTCGAAGGCGTGAAAGCGCGCGTGGCCCCGAT 729 Query 156871 CCTGTACACAGAAGGTGCATTTGGTGTCCGTCTGAATCCTGATGATGAAATTCTGGAACT 156930 ||| || | |||||||| | ||| || ||||| ||| |||| ||||| || ||| | Sbjct 730 CCTCTATATGGAAGGTGCTTGTGGCGTGCGTCTCAATGCTGACGATGATGTTTCTGAAAT 789 Query 156931 GTTCAAAAATGGGCGTAGCTCTATCAGTCTGGGATACATCGGACTGCATGAAAC 156984 |||||||| || ||| ||||| ||||| |||||||| | || ||||| Sbjct 790 CTTCAAAAACGGTCGTGCGTCTATTTCGCTGGGTTACATCGGCATCCACGAAAC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576542847043040