Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031085.1
Length=166634
Score E
Sequences producing significant alignments: (Bits) Value
seq732 84.2 2e-11
>seq732
Length=24842
Score = 84.2 bits (92), Expect = 2e-11
Identities = 199/297 (67%), Gaps = 8/297 (3%)
Strand=Plus/Minus
Query 43851 ATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 43910
||||| |||||||| | |||||||| ||||| || || ||||| || || || ||||||
Sbjct 447 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 388
Query 43911 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 43969
|||||| |||| | | | || | ||| || || || | | || || || ||||| |
Sbjct 387 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 329
Query 43970 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 44029
| |||| | | | |||||| ||| ||||| || ||| || | || ||||||
Sbjct 328 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATAGATTCCTGAAT 269
Query 44030 CATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 44086
|| || ||| |||| || || |||||| || |||||||| || || ||
Sbjct 268 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 212
Query 44087 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTA 44143
||||| | | || || |||||||| || || | ||||| ||||||||
Sbjct 211 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGTA 155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 533073105413440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |