Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq732 84.2 2e-11 >seq732 Length=24842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/270 (68%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 159435 GAAGTAAATACACTTTTCAGCTCTAATGGACAAACGCCTTTTGTAACAATTACATTTGGT 159494 |||||||| || || || | | || || || ||||| |||||||| || |||||| Sbjct 182 GAAGTAAACACCCTGCACACCGCCAACGGTCAGACGCCGTTTGTAACCTTTGGTTTTGGT 241 Query 159495 ACAGGAACTGACTGGACTGAA---CGAATGATTCAGAAAGCAATTCTGAAAAATCGTATT 159551 || || |||| ||| || |||||||| || | || ||| || ||||| Sbjct 242 CTGGGCACCAGCTGG---GAATCGCGCCTGATTCAGGAATCTATCCTGCGTAACCGTATC 298 Query 159552 AAAGGTCTTGGTCGTGATGGGATAACTCCTATTTTCCCTAAGCTTGTTATGTTCG-TTGA 159610 ||| || ||| | | | |||| | | ||||| || || || | | || || Sbjct 299 GCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTTCCCGAAACTGGTGTT-TGCGATTCG 357 Query 159611 AGAAGGTGTTAATCTTTATAAAGACGATCCGAACTATGATATTAAACAGCTTGCTTTAGA 159670 || ||| | || | | | |||| |||||||||||| || || |||||||| || | || Sbjct 358 CGATGGTCTGAACCATAAAAAAGGCGATCCGAACTACGACATCAAACAGCTGGCGCTGGA 417 Query 159671 GTGCGCAAGCAAAAGAATGTATCCTGATAT 159700 |||||||||||| | |||||||| ||||| Sbjct 418 GTGCGCAAGCAAGCGCATGTATCCGGATAT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542631008854560