Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031091.1
Length=43277
Score E
Sequences producing significant alignments: (Bits) Value
seq1627 145 2e-30
>seq1627
Length=6655
Score = 145 bits (160), Expect = 2e-30
Identities = 319/474 (67%), Gaps = 8/474 (2%)
Strand=Plus/Minus
Query 9973 GCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGAC 10032
||| |||||||| || || ||||| ||| |||| || |||| | || |||| | || ||
Sbjct 6625 GCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCAC 6566
Query 10033 CTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGACCGGCTA 10092
|| || ||||||||||||||||| || || | ||||| || | | |||||
Sbjct 6565 GTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTGACTACCGGCGGCTT 6506
Query 10093 CAGCGGCGATGACA-TACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTGGCGACC 10151
|| | | || ||| ||| ||| | ||||||| | ||||| || || ||| ||
Sbjct 6505 CAACAGTGAA-ACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACG 6447
Query 10152 TACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCGCTGAAC 10211
|| ||| | | || ||| | ||||| | ||||| ||||| |||| ||| |
Sbjct 6446 ATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATG 6387
Query 10212 AGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTACGCAGCC 10271
| || |||| ||| || || | | || || | || || |||| |||| || || |
Sbjct 6386 AAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTC 6327
Query 10272 CGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGC 10331
|| |||| ||||| || |||||||||||||| || || || ||||| |||||| |
Sbjct 6326 CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTA 6267
Query 10332 ACATGCCCAAGCCGGATCG---AGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGC 10388
||||||||| || || | | | |||| | ||||| | || |||||||
Sbjct 6266 TCATGCCCAAACCAGACGGGTTAACGGCAGCAAAG---AACCTTGCAGAGGCGTTCGAGC 6210
Query 10389 ATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAAT 10442
|||| ||||| ||||||||| || || || || |||||||| ||||||
Sbjct 6209 ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAT 6156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138357971351208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |