Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq1627 145 2e-30 >seq1627 Length=6655 Score = 145 bits (160), Expect = 2e-30 Identities = 319/474 (67%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 9973 GCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGAC 10032 ||| |||||||| || || ||||| ||| |||| || |||| | || |||| | || || Sbjct 6625 GCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCAC 6566 Query 10033 CTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGACCGGCTA 10092 || || ||||||||||||||||| || || | ||||| || | | ||||| Sbjct 6565 GTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTGACTACCGGCGGCTT 6506 Query 10093 CAGCGGCGATGACA-TACGCGACTTGATGCTGGAAAGCGTGGAGAAGCGTTTTGGCGACC 10151 || | | || ||| ||| ||| | ||||||| | ||||| || || ||| || Sbjct 6505 CAACAGTGAA-ACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACG 6447 Query 10152 TACTGCCGACCACACCGGTGCAATGGCTAAGCGATAACGGTTCGGCCTACATCGCTGAAC 10211 || ||| | | || ||| | ||||| | ||||| ||||| |||| ||| | Sbjct 6446 ATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATG 6387 Query 10212 AGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGTGACCACGCCGGTACGCAGCC 10271 | || |||| ||| || || | | || || | || || |||| |||| || || | Sbjct 6386 AAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTC 6327 Query 10272 CGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAATCAAGCGCGACTACGTGGCGC 10331 || |||| ||||| || |||||||||||||| || || || ||||| |||||| | Sbjct 6326 CGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTA 6267 Query 10332 ACATGCCCAAGCCGGATCG---AGAGACAGCCTTGCGCAACCTGACGATTGCCTTCGAGC 10388 ||||||||| || || | | | |||| | ||||| | || ||||||| Sbjct 6266 TCATGCCCAAACCAGACGGGTTAACGGCAGCAAAG---AACCTTGCAGAGGCGTTCGAGC 6210 Query 10389 ATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTCGCCGAGGGAAT 10442 |||| ||||| ||||||||| || || || || |||||||| |||||| Sbjct 6209 ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAT 6156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138357971351208